Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_L10
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 73 2e-13
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 66 3e-11
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069... 59 3e-09
11_01_0557 + 4394754-4396040 57 1e-08
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 54 1e-07
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 48 1e-05
12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106 29 2.7
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 29 2.7
08_02_1476 - 27372288-27372310,27372508-27372586,27372818-273730... 28 6.2
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 28 6.2
04_04_1600 + 34704527-34704758,34705393-34706777 28 8.3
01_01_0422 - 3188406-3189254 28 8.3
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/60 (55%), Positives = 44/60 (73%)
Frame = +1
Query: 490 FEWSEATQGLILGSFYYGYVLTHIPGGMLAERFGGKWVLGLGLLSTAICTFITPITVKMG 669
F WS AT GLI SF++GY+LT I GG+ A+RFGGK VLG G++ +I T +TP+ K+G
Sbjct: 213 FGWSPATVGLIQSSFFWGYLLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIG 272
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 65.7 bits (153), Expect = 3e-11
Identities = 29/60 (48%), Positives = 40/60 (66%)
Frame = +1
Query: 490 FEWSEATQGLILGSFYYGYVLTHIPGGMLAERFGGKWVLGLGLLSTAICTFITPITVKMG 669
F W+ T GLI SF++GY+LT I GG+ A+ GGK VLG G++ +I T +TP K+G
Sbjct: 151 FGWNPQTVGLIQSSFFWGYLLTQIAGGIWADTVGGKTVLGFGVIWWSIATALTPFAAKLG 210
>09_06_0242 -
21806370-21806483,21806574-21806660,21806865-21806917,
21806999-21807140,21807406-21807501,21808617-21808785,
21808859-21808939,21809032-21809106,21810322-21810387,
21811013-21811158,21811898-21812344
Length = 491
Score = 59.3 bits (137), Expect = 3e-09
Identities = 23/54 (42%), Positives = 39/54 (72%)
Frame = +1
Query: 490 FEWSEATQGLILGSFYYGYVLTHIPGGMLAERFGGKWVLGLGLLSTAICTFITP 651
+ W+ +T GL+ SF++GY L+ +PGG LA+ FGG+ VL +G+++ ++ T I P
Sbjct: 163 YGWNSSTAGLVQSSFFWGYALSQLPGGWLAKLFGGRRVLEIGVVAWSLATAIIP 216
>11_01_0557 + 4394754-4396040
Length = 428
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +1
Query: 457 LAYYRADDAVLFEWSEATQGLILGSFYYGYVLTHIPGGMLAERFGGKWVLGLG-LLSTAI 633
+AY A DAV ++A +G+IL FYYGYVL+ IPGG A+R GG+ VL L +L ++I
Sbjct: 29 IAYTVAADAV--GTNQANKGMILSMFYYGYVLSQIPGGWAAQRLGGRLVLLLSFVLWSSI 86
Query: 634 CTFI 645
C +
Sbjct: 87 CAVV 90
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = +1
Query: 430 IVANATSPVLAYYRADDAVLFEWSEATQGLILGSFYYGYVLTHIPGGMLAERFGGKWVLG 609
++ NA V++ A + WS + G++ SF +GYV + + GG LA+R+GGK V+
Sbjct: 134 LLCNADRVVMSVAVVPFAAQYGWSSSFLGIVQSSFLWGYVFSSMVGGALADRYGGKKVMA 193
Query: 610 LGLLSTAICTFITP 651
++ TF+TP
Sbjct: 194 GAAALWSLATFLTP 207
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/73 (28%), Positives = 42/73 (57%)
Frame = +1
Query: 433 VANATSPVLAYYRADDAVLFEWSEATQGLILGSFYYGYVLTHIPGGMLAERFGGKWVLGL 612
+ NA V++ + + W+ + G++ SF +GY+++ I GG L + +GGK V+
Sbjct: 110 LCNADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMAY 169
Query: 613 GLLSTAICTFITP 651
G+ ++ TF++P
Sbjct: 170 GVALWSLATFLSP 182
>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
Length = 427
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 541 GYVLTHIPGGMLAERFGGKWVLGLGLLSTAICTFITPITVK 663
G L IPGG A+R GG+ VL L + ++ + P+ K
Sbjct: 49 GEYLWEIPGGWAAQRIGGRRVLLLSFVLWSLICGLIPLDPK 89
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Frame = +1
Query: 433 VANATSPVLAYYRADDAVLFEW--SEATQGLILGSFYYGYVLTHIPGGMLAERFGGKWVL 606
VA A +L + +V EW S A +GL+ + G ++ GG++++R+G +++
Sbjct: 44 VAEAMEVMLLSF-VGPSVKAEWGVSGAAEGLVSSVVFAGMLIGACLGGLISDRYGRSFLI 102
Query: 607 ------------GLGLLSTAICTFI 645
G+G LSTA+ T I
Sbjct: 103 ATLQSKYIYFNFGIGFLSTAVVTGI 127
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 571 MLAERFGGKWVLGLGLLSTAICTFITPITVKMGGATALFIL 693
+L +R G K LG+ LL + C F+ P+ V +G + +L
Sbjct: 380 LLVDRIGRKVSLGIMLLLS--CAFLAPLAVHLGQGSVTTLL 418
>08_02_1476 -
27372288-27372310,27372508-27372586,27372818-27373085,
27373346-27373410,27373611-27373757
Length = 193
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 597 MGSGIRFTIDSYLHIYNTDYS*NGRRY 677
+GS +R D+Y+ I+ T+YS +G ++
Sbjct: 164 LGSSVRLDTDAYIVIFTTNYSFSGFKF 190
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 231 DGMEACAIETIHNPTALCVSGDG--TIGNSECLHDACMPQLSYHSDGEEKRCSRRG 392
DG+E E +H L V GDG I E + C+ +L+ + + CS +G
Sbjct: 218 DGIEETVDELVHFTEFLTVPGDGGKDIPEEEAVCRICLVELNEGGETLKMECSCKG 273
>04_04_1600 + 34704527-34704758,34705393-34706777
Length = 538
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 499 SEATQGLILGSFYYGYVLTHIPGGMLAERFGGKWVLGLGLL 621
+E Q +++G + +L + GG ++ G KW +GL +
Sbjct: 96 NEVQQEVLVGCLSFISLLGSLAGGRTSDAVGRKWTIGLAAI 136
>01_01_0422 - 3188406-3189254
Length = 282
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 421 DLNIVANATSPVLAYYRADDAVLFEWSEATQGLILGSFYYGY 546
+L + A + L +R D W E T+GLI G+ Y G+
Sbjct: 68 ELTLATRADNLYLEGFRGSDGTS-AWWELTRGLIAGATYLGF 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,120,193
Number of Sequences: 37544
Number of extensions: 389721
Number of successful extensions: 845
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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