Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_L08
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   200   9e-53
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   200   1e-52
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    29   0.64 
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    27   2.6  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    26   3.4  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   3.4  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   6.0  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   7.9  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.9  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    25   7.9  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   7.9  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  200 bits (489), Expect = 9e-53
 Identities = 95/145 (65%), Positives = 110/145 (75%), Gaps = 1/145 (0%)
 Frame = +3

Query: 93  HLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHAL 272
           + F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT  ++
Sbjct: 13  YTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSV 72

Query: 273 GVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 452
           GV++ K V  R + KR+N+R+EHVKHSKCRQDFL RVK NE   KEAKA GKTV L+RQP
Sbjct: 73  GVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQP 132

Query: 453 APPKAAHIVS-GTEKPVLLAPIPYE 524
           APP  AH VS    +PV L P+ Y+
Sbjct: 133 APPATAHFVSTENNEPVTLHPVAYD 157


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  200 bits (488), Expect = 1e-52
 Identities = 95/145 (65%), Positives = 110/145 (75%), Gaps = 1/145 (0%)
 Frame = +3

Query: 93  HLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHAL 272
           + F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT  ++
Sbjct: 13  YTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSV 72

Query: 273 GVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 452
           GV++ K V  R + KR+N+R+EHVKHSKCRQDFL RVK NE   KEAKA GKTV L+RQP
Sbjct: 73  GVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQP 132

Query: 453 APPKAAHIVS-GTEKPVLLAPIPYE 524
           APP  AH VS    +PV L P+ Y+
Sbjct: 133 APPAKAHFVSTENNEPVTLHPVAYD 157


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
 Frame = -3

Query: 497 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 333
           GF S+T    SF+G W+ L +  + G L G LQ  +     +++SL EV  ++ +   L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503

Query: 332 TDIDALRYN 306
               ++RY+
Sbjct: 504 RAFGSIRYS 512


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 66  EFVIFEPCVTKLDG 25
           EFVIFE C+T+++G
Sbjct: 726 EFVIFEACLTRIEG 739


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = -3

Query: 428 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 264
           +A SLG  Q   +L      +LSA G   M   D+ +    PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 128 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 232
           +  L  H    SW   +  R+ C +KGY     PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 323 DALRYNPSANTLVDNHTES 267
           D  R N S N ++DNHT++
Sbjct: 29  DPARKNESTNDVIDNHTDT 47


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 354 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 449
           K   DF KR  E +R+ +E   A KTV L  Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 408 EAKAAGKTVNLKRQPAPPKAAHIVSGT 488
           + KA  K  +  +QP+PP A H  + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
 Frame = +2

Query: 20  LDPSSFVTQGSKMTNSKGYRRGTRALVRSQV---------PHTWNYSAL 139
           + PSS +TQ  K T  K   + T  ++ + V         P+ WNY+ L
Sbjct: 1   MPPSSSITQEDKATIRKYIPKSTNKIIAAAVVKLYVAYPDPNKWNYTGL 49


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +2

Query: 47  GSKMTNSKGYRRGTRALVRSQVPHTWNYSALHVHESVQSWRH 172
           GS +T +      +R+  + + PH W++    +H   Q+  H
Sbjct: 88  GSVLTANYNSASISRSKAKDEKPHVWHHEGKSLHPERQTSSH 129


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 316 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRN 495
           SAS S  S++S+ S D  ++   +R R   RKP +  +P+  +  + P  + T   +   
Sbjct: 56  SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114

Query: 496 P 498
           P
Sbjct: 115 P 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,376
Number of Sequences: 5004
Number of extensions: 45483
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)