Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_L07
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    28   1.4  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    28   1.9  

>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 426 NQKVKRYHVHGRGGE*NPDLLSVSKQFSVL 337
           N+ +  YHV G GG   PD++S+ +  ++L
Sbjct: 535 NRTIHTYHVEGAGGGHAPDIISLVQNPNIL 564


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
 Frame = +1

Query: 523 STGMVDKTAVKTIYDIISSDHKQFCLLHCISAYPVP---------FEDC--NLTVLQDYK 669
           S  +     ++ +  +I + H   CLLH +S  P P          EDC  NL + + + 
Sbjct: 178 SHNLTPSNVIRELPIVIHNSHLATCLLHSLSEPPTPASTLTAEAALEDCESNLPLTETFS 237

Query: 670 NTFDVPVG 693
           N F+V +G
Sbjct: 238 N-FEVSLG 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,973
Number of Sequences: 5004
Number of extensions: 68413
Number of successful extensions: 179
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)