Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_L07
(833 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore co... 30 2.3
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 30 2.3
AF022979-10|AAB69905.3| 651|Caenorhabditis elegans Nematode ast... 30 2.3
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z99281-45|CAC70123.2| 222|Caenorhabditis elegans Hypothetical p... 29 5.4
AF038614-2|AAB92061.2| 321|Caenorhabditis elegans Serpentine re... 29 5.4
Z81136-5|CAB03460.2| 733|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z48334-6|CAA88313.1| 655|Caenorhabditis elegans Hypothetical pr... 28 9.5
AF314467-1|AAG41979.1| 655|Caenorhabditis elegans APC6 protein. 28 9.5
>U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform b protein.
Length = 889
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 530 PVDIIKGIFFEAAYFRKSKLFESPEPILINGTF 432
P+ + F EA+ F SK FE P P + G+F
Sbjct: 740 PIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSF 772
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform a protein.
Length = 1562
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 530 PVDIIKGIFFEAAYFRKSKLFESPEPILINGTF 432
P+ + F EA+ F SK FE P P + G+F
Sbjct: 740 PIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSF 772
>AF022979-10|AAB69905.3| 651|Caenorhabditis elegans Nematode
astacin protease protein32 protein.
Length = 651
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/77 (24%), Positives = 43/77 (55%)
Frame = +3
Query: 108 SVFYNSGSGTESPR*HRDRKKINKSC*GSWS*LREVSKDMSRREIYKKISRKALRQPKLV 287
+V ++ + T SPR ++ + + KS + LR V + ++++ KK+ +K ++ PK+
Sbjct: 82 TVTTSTSAPTTSPRVYKLKSEARKSLRKA---LRGVPPEKRKKQL-KKMGKKMMKIPKIT 137
Query: 288 GKDVRRTQKSFGILRYT 338
K+ + KS+ ++ T
Sbjct: 138 KKESNKLHKSYRKVKIT 154
>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
protein C18H2.1 protein.
Length = 1770
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 204 LREVSKDMSRREIYKKISRKALRQPKLVGKDVRRTQK 314
L E +K RE++K ++ L+ PKL K++R +K
Sbjct: 715 LDEATKVNGFREVFKPAYKQLLKTPKLFPKEIRNIEK 751
>Z99281-45|CAC70123.2| 222|Caenorhabditis elegans Hypothetical
protein Y57G11C.34 protein.
Length = 222
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +1
Query: 346 ELFRYAQEVGILFTASAMDM----VSFDFLVNLKVPFIKIGSGDSNNLLFLKYAASKKIP 513
+L R+AQ+ I T S +M V D + N++ + S D N LFLK S P
Sbjct: 4 KLARFAQKRWISSTTSTSNMYDPRVFRDPVTNVQELRKPLDSDDERNFLFLKAMKSDATP 63
Query: 514 LIISTGMVDK 543
+ ++DK
Sbjct: 64 VFYRDHVIDK 73
>AF038614-2|AAB92061.2| 321|Caenorhabditis elegans Serpentine
receptor, class v protein4 protein.
Length = 321
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -3
Query: 627 HRIRRYAMKQTELLVVRGN---DIVNCLYGSFVDHPR*YN*RNLFRSS 493
H++R+ K + L++R + D++ LY V PR Y NLF ++
Sbjct: 36 HQLRKNVFKSSFFLIIRMHAITDLLMFLYVELVARPRKYRVHNLFEAA 83
>Z81136-5|CAB03460.2| 733|Caenorhabditis elegans Hypothetical
protein W02B8.4 protein.
Length = 733
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 203 LAPASLAAFINFFAISMSPW*FCPASAIIKHGLLPPILMSSVILTSTILS 54
L+P L F+ F I +SP P I+ G+L P ++S ++L ILS
Sbjct: 612 LSPVVLTPFL-FAPIVLSPLALVPV--ILSPGILNPFILSPLVLCPFILS 658
>Z48334-6|CAA88313.1| 655|Caenorhabditis elegans Hypothetical
protein F10B5.6 protein.
Length = 655
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 736 PHPVRLRCRALDRSIQRERQKYSYSLVKQSDCS---LQMAP 623
P PVR + R ++ ER KYS++ + + D S L+M P
Sbjct: 163 PLPVRTLSQVTGRYVEEERMKYSFANMAELDNSSKKLRMVP 203
>AF314467-1|AAG41979.1| 655|Caenorhabditis elegans APC6 protein.
Length = 655
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 736 PHPVRLRCRALDRSIQRERQKYSYSLVKQSDCS---LQMAP 623
P PVR + R ++ ER KYS++ + + D S L+M P
Sbjct: 163 PLPVRTLSQVTGRYVEEERMKYSFANMAELDNSSKKLRMVP 203
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,754,359
Number of Sequences: 27780
Number of extensions: 388154
Number of successful extensions: 863
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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