Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_L05
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 29 0.57
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 29 0.99
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 1.3
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 27 2.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 3.0
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 27 3.0
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 27 3.0
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.3
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 5.3
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.3
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 26 5.3
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 26 5.3
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 26 7.0
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 26 7.0
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 9.2
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 9.2
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 25 9.2
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 29.5 bits (63), Expect = 0.57
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = +3
Query: 639 LLLWDLNTNKCISKLQVLXCPMSVDYHLEQQRGIIXNASNVIQIFNL 779
L +WDLNT C +L CP+ + + ++ + + +Q++++
Sbjct: 683 LRVWDLNTGSC---RDILKCPLGHIFFQHDESKVVSGSHSTLQLWDI 726
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 28.7 bits (61), Expect = 0.99
Identities = 18/90 (20%), Positives = 39/90 (43%)
Frame = +3
Query: 429 FCRFEANTKLASLYVPEKDYKINIYNFNGEKLGSLEYDDASVKLGDVMCLKFIEFPCDRP 608
FC+F N ++ V + + + +Y++ +L + + K+ +V K + P D
Sbjct: 18 FCKF-VNASSWNVIVAKVNC-LEVYSYENNRLCLITSANIFAKIVNVKAFKPVSSPTDHI 75
Query: 609 CLLXGYEAGWLLLWDLNTNKCISKLQVLXC 698
+ + L WD N N + +++ C
Sbjct: 76 IVATDSFRYFTLFWDANDNTVSNGIKIQDC 105
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 28.3 bits (60), Expect = 1.3
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 447 NTKLASLYVPEKDYKINIYNFNGEKLGSLE---YDDASVKLGDVMCLKFIEFPCDRPCLL 617
+T+L + +K K+ N E+L LE YD ++ L +V CL ++ CL
Sbjct: 701 HTQLVDDAIIDKFRKLQSKKINNEQLKQLENLMYDKFTISLFNVRCLIGPDYETGWRCLP 760
Query: 618 XGYEAGWLLLWDLNTNKCISKLQ 686
G + L L+ N IS LQ
Sbjct: 761 KGCDYHILKECSLDINFEISILQ 783
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = +3
Query: 468 YVPEKDYKINIYNFNGEKLGSLEYDDASVKLGDVMCLKFIEFPCDRPCLLXGYEAG 635
++ +D + +YN + +LGS +K G+++ + E ++ YEAG
Sbjct: 76 FLVREDSNLTLYNSDFTRLGSCHSRVPQIKEGELLRISGKEISIEKEISAESYEAG 131
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 612 LLXGYEAGWLLLWDLNTNKCISKLQVLXCPM 704
++ G G L++WDLN + +S L V P+
Sbjct: 2357 IVSGDAGGNLIIWDLNRAEFVSSLSVYKLPI 2387
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 27.1 bits (57), Expect = 3.0
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = +3
Query: 318 HTDSHLITQEKGGKLKVFELTNSGYEEDAVIEVDYPGFCRFEANTK----LASLYVPEKD 485
HT +L T +KGG++ +FE +S +Y F F+++ L SL + EK
Sbjct: 39 HTGDYLATGDKGGRVVLFERNHSKK------GCEYKFFTEFQSHEPEFDYLKSLEIEEKI 92
Query: 486 YKINIYNFNGEKLGSLEYDDASVKL 560
KI L +D ++KL
Sbjct: 93 NKIRWCKRTNRAHFLLSTNDKTIKL 117
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 725 TAKRNHXQCFKCDT 766
+ K+ H QCFKCDT
Sbjct: 274 SGKKLHPQCFKCDT 287
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 320 VYKMKNRSLTNLYLLLNSICLEVVC--VNITVFRTG 219
++ R LT+ ++L CL +VC ++IT+ TG
Sbjct: 336 IFSYLTRYLTDRDIILLGCCLNIVCMVIHITIHYTG 371
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 615 LXGYEAGWLLLWDL 656
L G GWLLLWDL
Sbjct: 1386 LIGTTKGWLLLWDL 1399
>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -1
Query: 131 IRRKQCHFWTSSNQNLCRN*KLK-RLTKLIKPLETKPQLRTTQN 3
++ +Q W+ Q L ++ + K +L +++KPL + P+L+ N
Sbjct: 84 MQERQERNWSLERQRLVQHFESKTKLQEILKPLSSDPKLKQPSN 127
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 26.2 bits (55), Expect = 5.3
Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Frame = +3
Query: 195 PGGLERLLAGSKNGY-VYAYNLQTNRVQQKIQVGQAPILHL-IHTDSHLITQEKGGK-LK 365
P G E + AGS++ + ++ +++QT ++ + + + P+ L ++ L+ K ++
Sbjct: 434 PSG-EIVCAGSQDSFEIFMWSVQTGQLLETLAGHEGPVSSLSFNSSGSLLASGSWDKTVR 492
Query: 366 VFEL-TNSGYEEDAVIEVDYPGFCRFEANTKLASLYVPEKDYKINIYN---------FNG 515
++++ + SG E I D F + K + V D ++ +N +G
Sbjct: 493 IWDIFSRSGIVEPLPIPSDVLSLA-FHPDGK--EVCVASLDGQLTFWNVQEGKQTSLIDG 549
Query: 516 EK--LGSLEYDDASVKLGDVMCLKF--IEFPCDRPCLLXGYEAGWLLLWDLNTNKCISKL 683
K G +DDA + F I + D C+L + ++ L+D+ T I K
Sbjct: 550 RKDLSGGRRFDDARTAENSSLNKTFTSICYSADGSCVLSAGTSKYVCLYDIITGVLIKKF 609
Query: 684 QV 689
Q+
Sbjct: 610 QL 611
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 378 TNSGYEEDAVIEVDYPGFCRFEANTKLASLYVPEKDYKINI 500
++S EEDA +E+D P + E N AS + K I +
Sbjct: 249 SDSEIEEDATVEIDRPVPTKTEENLLSASQLLKPKQQAIKL 289
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 408 IEVDYPGFCRFEANTKLASLYVPEKD-YKINIYNFNGEKLGSLEYDDASVKLGDVMCLKF 584
+ + Y G R + K ++ + E D KIN L LEY DA+V L + C+
Sbjct: 578 VAMAYYGLLRTKNYEKNENILIYEADDVKINFPQLIIAYLKHLEYVDAAVYLDYIACIPL 637
Query: 585 I 587
+
Sbjct: 638 V 638
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 7.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 367 TLSFPPFSCVIRWL 326
T+ + PFSC I+WL
Sbjct: 360 TIDYLPFSCAIKWL 373
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 288 LVSSAELYLSGGCMRKHNRFSNRLVTSLSPRVKN*KPVNKLAHYRHFG*CKQDPEE 121
L+ L+L+ C+ ++ R + V++ R+ V+ L RHFG DP+E
Sbjct: 625 LIELERLWLTRECILRYLRATKWHVSNAKKRI-----VDTLVWRRHFGVNNMDPDE 675
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 165 PVYSLAFSFLPGGLERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAPI 305
P+ S A P G + S NG+ + ++ + QK+ V + P+
Sbjct: 566 PLPSPAHIMYPEGSPGFIQHSPNGFTHGHSASPVNIGQKLDVPERPM 612
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 645 LWDLNTNKCISKLQV 689
LWD+ T +CI KL++
Sbjct: 428 LWDVETGQCILKLEI 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,093
Number of Sequences: 5004
Number of extensions: 61307
Number of successful extensions: 165
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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