Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_L03
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    28   1.9  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.6  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   4.5  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    27   4.5  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   5.9  

>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 293 FPSDMWPSIQIPTIPPFDPKIPNFA--FSFPSPDNIKKTKPQPGQTYSGVYVSSN 451
           FPS      + PTI   D   PN+   F+FP+   IK++  +P  TY    ++S+
Sbjct: 191 FPSSKDIKNETPTIDRCD--FPNYVPMFAFPNDITIKESDVRPVSTYHSFALTSD 243


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = -3

Query: 273 CQTKPALAMVINDNIKRNFVNAIIRRLKGFNNKKIELCSTVETNCRTLNSHTATADLSI 97
           C+    L+ +IND++       ++ + +  NNK ++    +E N   +NS  A   +SI
Sbjct: 149 CKDGLILSKLINDSVPDTIDERVLNKQR--NNKPLDNFKCIENNNVVINSAKAMGGISI 205


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 378  GNEKAKFGILGSNGGIVGICIEGHISLGN 292
            GN     GILG    IVG+ ++G  ++GN
Sbjct: 1164 GNSSLVEGILGQTASIVGMPLKGISTVGN 1192


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 255 LAMVINDNIKRNFVNAIIRRLKGFNNKKIELCSTVETNCRTLNSHTAT 112
           LA + N NI  N +     +    + K +  C+   +NC ++N H AT
Sbjct: 123 LANLKNQNIGDNVIPYPNNKAVKVSAKSLRSCNISISNCSSVNLHNAT 170


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 275 DDNFPGFPSDMWPSIQIPTIPPFDPKIPNFAFSFPSPDNIK 397
           D  +  +P+  W S  + T  P DP++P  AF    P NIK
Sbjct: 817 DLGYEHYPTCPWISDLLKTYFPQDPEVPFLAFP-DFPFNIK 856


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,871
Number of Sequences: 5004
Number of extensions: 71518
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)