Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_L03
         (851 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68299-6|CAA92610.2|  412|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U58748-4|AAB52967.1|  522|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical ...    29   3.2  
U58753-4|AAC24435.2|  312|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U59211-1|AAB09670.1|  420|Caenorhabditis elegans embryonic membr...    29   5.5  
U53343-3|AAA96220.2|  420|Caenorhabditis elegans Innexin protein...    29   5.5  
Z81489-9|CAE17759.1|  326|Caenorhabditis elegans Hypothetical pr...    28   9.7  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    28   9.7  
AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical ...    28   9.7  
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    28   9.7  

>Z68299-6|CAA92610.2|  412|Caenorhabditis elegans Hypothetical
           protein T04B2.3a protein.
          Length = 412

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +2

Query: 290 GFPSDMWPSIQIPTIPPFDPKIPNFAFSFP-SPDNIKKTKPQP----GQTYSGVYVSSNG 454
           GFP+  + +  IP    FDP   +F+   P SP +I    P P       Y+    + N 
Sbjct: 59  GFPATDFDNQNIPKATQFDPNYYDFSHQNPFSPQSISMNTPAPFNGIPPGYTANMTTINP 118

Query: 455 GKGTMVANI 481
           G G  +A I
Sbjct: 119 GNGPPIAAI 127


>Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical
           protein T01G9.3 protein.
          Length = 603

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 326 PTIPPFDPKIPNFAFSFPSPDNIKKTKPQPGQTYSGV 436
           P  PPFDP + +      +P  I    P+PG +Y G+
Sbjct: 567 PLSPPFDPFLVSTETFKATPPLIPPAPPKPGSSYFGI 603


>U58748-4|AAB52967.1|  522|Caenorhabditis elegans Hypothetical
           protein ZK180.3a protein.
          Length = 522

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = +3

Query: 312 PLYRSQRFRHSIPKFRTLLFRSPLLTTL 395
           PL +++  R S+PKF  LL+ SP+++T+
Sbjct: 58  PLRKAEIIRGSLPKFINLLWLSPIISTV 85


>AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical
           protein F52F10.3 protein.
          Length = 684

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -3

Query: 177 KKIELCSTVETNCRTLNSHTATADLSIIHKLLXATKQ 67
           K +E+ STV   C TLN+ T T +  I+ + L A KQ
Sbjct: 30  KSLEIFSTVSVECLTLNNCT-TQESKILDENLYAVKQ 65


>U58753-4|AAC24435.2|  312|Caenorhabditis elegans Hypothetical
           protein W03B1.7 protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 632 NEYIHYIITILR*FKCYLI*FKCCFSFL 715
           N+Y +Y I  L  F+C+LI F  C S++
Sbjct: 138 NQYEYYAIIGLLTFRCFLIQFSGCLSYI 165


>U59211-1|AAB09670.1|  420|Caenorhabditis elegans embryonic membrane
           protein protein.
          Length = 420

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 113 VAVCEFSVLQLVSTVLHS-SIFLLLKPFNRLIMAFTKFLFMLSLIT 247
           V +C+FSV +L +   ++    L++  FN  I  F  F F+  LIT
Sbjct: 247 VTLCDFSVRKLANVHRYTVQCVLMINMFNEKIYLFIWFWFVFVLIT 292


>U53343-3|AAA96220.2|  420|Caenorhabditis elegans Innexin protein 3
           protein.
          Length = 420

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 113 VAVCEFSVLQLVSTVLHS-SIFLLLKPFNRLIMAFTKFLFMLSLIT 247
           V +C+FSV +L +   ++    L++  FN  I  F  F F+  LIT
Sbjct: 247 VTLCDFSVRKLANVHRYTVQCVLMINMFNEKIYLFIWFWFVFVLIT 292


>Z81489-9|CAE17759.1|  326|Caenorhabditis elegans Hypothetical
           protein C55A1.12 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +2

Query: 83  NNL*IILKSAVAVCEFSVLQLVSTVLHSSIFLLLKPFNRLIMAFT----KFLFMLSLITI 250
           ++L I+    +     SVL LVS +L+  I   ++ F  L+ A T    K++F  ++I I
Sbjct: 176 DSLRIVTVYGITCVVLSVLLLVSALLYVPIMFRIRKFTHLVSAQTNKPHKYIFWQTMIVI 235


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 294  SQAICGPLYRSQRFRHSIPKFRTLLFRSPLLTTLRKLNHNPDKPIAAS 437
            + AI G L + +RF H +    T   R P+L++L   + N +K   AS
Sbjct: 1399 TSAIIGSLAKIERFAHQLLCSTTTTERFPMLSSLLLKHFNCEKETLAS 1446


>AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.4 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = -2

Query: 484 IDVCNHSSLPSIAAHVDAAIGLSGLWFSFLNVVRRGERKSKVRN 353
           +D C  S LP I         L G W   L   RRG++ S   N
Sbjct: 187 LDACRLSFLPIILVWAVYIYFLYGFWLGVLYYQRRGDQPSPTTN 230


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
            protein F07B7.12 protein.
          Length = 1900

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 294  SQAICGPLYRSQRFRHSIPKFRTLLFRSPLLTTLRKLNHNPDKPIAAS 437
            + AI G L + +RF H +    T   R P+L++L   + N +K   AS
Sbjct: 1359 TSAIIGSLAKIERFAHQLLCSTTTTERFPMLSSLLLKHFNCEKETLAS 1406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,516,026
Number of Sequences: 27780
Number of extensions: 402172
Number of successful extensions: 1008
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)