Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_L03
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.67 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   2.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   8.2  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +3

Query: 234 CH*SPSRALALFGRTITFRDSQAICGPLYRSQRFR 338
           C  SPS          + RDS  ICG   RSQ FR
Sbjct: 331 CRCSPSNPSITRTGLSSVRDSSIICGGNKRSQVFR 365


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 303 SLGNPGKLSSCQTKPALA 250
           S  NPG + +C T PA A
Sbjct: 20  SSANPGTIQACTTSPATA 37


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +2

Query: 65  ACFVAXNNL*IILKS-AVAVCEFSVLQLVSTVLHSSIFLLLKPFNRLIMAFTKFLFMLSL 241
           ACF A N L +ILK   +   +    +L + V +   F  +      ++ FT F  + ++
Sbjct: 484 ACFCARNELMMILKEIKIITDQLKSEELNAKVTNDWKFAAMVIDRMCLIIFTLFTIIATI 543

Query: 242 ITIASA 259
             + SA
Sbjct: 544 AVLLSA 549


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 285 FRDSQAICGPLYRSQRFRHSIPKFRTLLFRSPLLTTL--RKLNH-NPDKPIAAST*AAME 455
           FR+   +   LY      H I K+ T   ++PLL     R L++  PD+  A+ T A M+
Sbjct: 2   FREFVLLASLLYLGNESVHGIQKWGTQFGQAPLLERFFWRTLDYAYPDE--ASKTMAMMK 59

Query: 456 G 458
           G
Sbjct: 60  G 60


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 338 PFDPKIPNFAFSFPSPDNIKKTKPQPGQTYSGVYVSSN 451
           PF    P+  FSFP+  ++ K +PQ       V +SS+
Sbjct: 609 PFYITEPHQIFSFPARLSLPKGQPQGFPLQFLVVISSS 646


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,956
Number of Sequences: 438
Number of extensions: 5138
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)