Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_L02
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1191 + 24690936-24691029,24691184-24691377                       31   1.0  
04_03_0515 + 16698589-16701066                                         29   4.2  
04_04_1086 - 30725010-30725138,30725748-30725786,30725876-307259...    27   9.7  

>07_03_1191 + 24690936-24691029,24691184-24691377
          Length = 95

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 366 IVYMLLIRQ--FPTMCYPQIAKFIYICQIGSYKLICELNRCSLMCEGHGKTL 217
           +V +LLI    FP +CY  +     +CQ   Y   C   +C  MC G G+T+
Sbjct: 14  LVTLLLIAALLFPAVCYAHVEAKT-VCQKTEYG--CTQEKCHQMCLGDGRTV 62


>04_03_0515 + 16698589-16701066
          Length = 825

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
 Frame = +1

Query: 223  FAMTFTHKTTPVKFTYQLIGTNLANVDEFCD----LGVTHGRKLSYEKHIDNIVKRAYIS 390
            FA   T+   P   TY+++ TNL   + F D             + +  I N + R  ++
Sbjct: 703  FAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLN 762

Query: 391  LGFIKRLGAQFTSAKIFKVLYCAYVRSILEYCSQVWNPRYKIYINRLETIQTKFMR 558
             G + + G   +      +L  A   S+L Y   V N +Y+ YI  L   + +F+R
Sbjct: 763  KGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSV-NGKYREYIKLLPE-KYRFLR 816


>04_04_1086 -
           30725010-30725138,30725748-30725786,30725876-30725998,
           30726953-30727015,30727540-30727620,30727998-30728088,
           30728295-30728366,30728452-30728552,30728681-30728779,
           30729132-30729329,30730792-30730824,30731084-30731192,
           30732088-30732149,30732388-30732468,30732549-30732704,
           30732812-30732976,30733351-30733413,30733492-30733545,
           30733574-30733612,30733727-30733783,30733862-30733930,
           30734022-30734135,30734216-30734284,30734821-30734927,
           30735207-30735363
          Length = 776

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 274 LIGTNLANVDEFCDLGVTHGRKLSYEKHI 360
           LIGTN++ +D F D G  HG    Y KH+
Sbjct: 592 LIGTNISFIDSFYDPG-PHG-NFRYSKHM 618


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,742,144
Number of Sequences: 37544
Number of extensions: 328484
Number of successful extensions: 684
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)