Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_L02
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.63 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   1.4  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   3.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.3  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +1

Query: 478 EYCSQVWNPRYKIYINRLETIQTKFMRFLQFKTKVYDPDYETRCXRHHILPLEE 639
           EY   VW    K+ +    +I +  + +  FK  V +   +T C  ++++P  E
Sbjct: 492 EYDQNVWVLSNKLAMYLYGSIDSSKINYRIFKANVKEAVKDTXCDPNYVVPDSE 545


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 84  VRRPKTCTYIIYKNIKHQRAEQRPLRN 4
           +R  K C   I   IK ++ EQR LRN
Sbjct: 267 IRMNKLCIQTIGGQIKPRKHEQRLLRN 293


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 60 YIIYKNIKHQRAEQRP 13
          +++Y NIK +R+  RP
Sbjct: 35 WVVYNNIKRKRSWSRP 50


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 60  YIIYKNIKHQRAEQRP 13
           +++Y NIK +R+  RP
Sbjct: 156 WVVYNNIKRKRSWSRP 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,633
Number of Sequences: 438
Number of extensions: 3862
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)