Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_K20
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    57   1e-08
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    31   0.96 
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    31   0.96 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    31   0.96 
X74228-1|CAA52299.1|  491|Caenorhabditis elegans pha-1 protein.        31   1.3  
X73845-1|CAA52066.1|  491|Caenorhabditis elegans pha1 protein.         31   1.3  
AL032642-5|CAD91711.1|  453|Caenorhabditis elegans Hypothetical ...    31   1.3  
AL032642-4|CAA21655.1|  491|Caenorhabditis elegans Hypothetical ...    31   1.3  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
 Frame = -2

Query: 515 GDFNCHHQMFGC-GTTDTNGVHLVEILDLQ-NLCLLNTGSPTRRTKPNEKPSAVDLSICT 342
           GD N HH  +   G+ DT G  L E++DL  +L + N    TR        S+ D++ICT
Sbjct: 38  GDVNAHHSAWHSEGSEDTRGRELAELIDLHPDLIIQNEQVHTRAD--TYSISSPDITICT 95

Query: 341 PDLASSHSWYTLSSTFGSDHFXXXXXXXXXXXPYQKREPRVKYKLNNADWSAFKNLVESM 162
            DLA+   W TL    GSDH               KR  R+      A+W  F++ +ES 
Sbjct: 96  ADLATKCHWSTLYK-LGSDHIPMKLKINQAAT--PKRPKRLVANFKKANWQLFRDHIESR 152

Query: 161 MLPHIG 144
           +  + G
Sbjct: 153 INGYSG 158



 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -1

Query: 156 ASYRPIALSSVLTKVAEHLVKNRLEWFIENNNFIANSQYGFRKSKST 16
           +SYRPI+L S + K+ E  +  R++  IE+       Q+GF+   ST
Sbjct: 403 SSYRPISLLSPIAKLLEKAILKRIKNSIES----PAHQHGFKPEHST 445


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = -1

Query: 162 DVASYRPIALSSVLTKVAEHLVKNRLEWFIENNNFIANSQYGFRKSKSTI 13
           ++ +YRPI L  VL KV    + NR+   ++    +   Q GFR+S STI
Sbjct: 448 NLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTI 495


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = -1

Query: 162 DVASYRPIALSSVLTKVAEHLVKNRLEWFIENNNFIANSQYGFRKSKSTI 13
           ++ +YRPI L  VL KV    + NR+   ++    +   Q GFR+S STI
Sbjct: 619 NLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTI 666


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = -1

Query: 162 DVASYRPIALSSVLTKVAEHLVKNRLEWFIENNNFIANSQYGFRKSKSTI 13
           ++ +YRPI L  VL KV    + NR+   ++    +   Q GFR+S STI
Sbjct: 358 NLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTI 405


>X74228-1|CAA52299.1|  491|Caenorhabditis elegans pha-1 protein.
          Length = 491

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -1

Query: 123 LTKVAEHLVKNRLEWFIENNNFIANSQYGFRKSKSTI 13
           LTKV E  +KNR   F   +NFIAN++  F  +K T+
Sbjct: 357 LTKVVEQQIKNRKSLF---DNFIANARRIFPSNKITV 390


>X73845-1|CAA52066.1|  491|Caenorhabditis elegans pha1 protein.
          Length = 491

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -1

Query: 123 LTKVAEHLVKNRLEWFIENNNFIANSQYGFRKSKSTI 13
           LTKV E  +KNR   F   +NFIAN++  F  +K T+
Sbjct: 357 LTKVVEQQIKNRKSLF---DNFIANARRIFPSNKITV 390


>AL032642-5|CAD91711.1|  453|Caenorhabditis elegans Hypothetical
           protein Y48A6C.5b protein.
          Length = 453

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -1

Query: 123 LTKVAEHLVKNRLEWFIENNNFIANSQYGFRKSKSTI 13
           LTKV E  +KNR   F   +NFIAN++  F  +K T+
Sbjct: 319 LTKVVEQQIKNRKSLF---DNFIANARRIFPSNKITV 352


>AL032642-4|CAA21655.1|  491|Caenorhabditis elegans Hypothetical
           protein Y48A6C.5a protein.
          Length = 491

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -1

Query: 123 LTKVAEHLVKNRLEWFIENNNFIANSQYGFRKSKSTI 13
           LTKV E  +KNR   F   +NFIAN++  F  +K T+
Sbjct: 357 LTKVVEQQIKNRKSLF---DNFIANARRIFPSNKITV 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,921,690
Number of Sequences: 27780
Number of extensions: 296112
Number of successful extensions: 621
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)