Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_K19
(885 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ... 68 2e-12
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ... 55 1e-08
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 48 2e-06
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz... 31 0.29
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 28 1.5
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 27 3.6
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 27 4.7
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 4.7
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.2
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 8.2
>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 80
Score = 67.7 bits (158), Expect = 2e-12
Identities = 34/55 (61%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Frame = +3
Query: 126 EVTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFTQ-KTLT 287
E+ D S GCG F V+IVS F+GK LARHRLVN LQE +K IHAFTQ +TL+
Sbjct: 21 EIQDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVNHKLQEVIKDIHAFTQVRTLS 75
>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 116
Score = 55.2 bits (127), Expect = 1e-08
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +3
Query: 129 VTDESDGCGAKFSVLIVSDKFKGKPLLARHRLVNTLLQEELKTIHAFTQKTLTVD 293
V D S GCG+ + V I S F+GK LA+HRLVN++L+EE++ +H T D
Sbjct: 51 VIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSILKEEIRNMHGLNLSTEVED 105
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 48.0 bits (109), Expect = 2e-06
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = +1
Query: 460 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCV---DLQET 630
VS+PGK IL GEH+VVYG TA+A ++ LRS ++ N V + +LQ
Sbjct: 7 VSSPGKTILFGEHAVVYGATALAAAVSLRSYCKLQTTNNNEIVIVMSDIGTERRWNLQSL 66
Query: 631 IPLEPTVKSLFHPKLAPGI 687
TV+++ HP +P +
Sbjct: 67 PWQHVTVENVQHPASSPNL 85
>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 102
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 162 FSVLIVSDKFKGKPLLARHRLVNTLLQEE 248
F + IVS +F G +ARHRLV LL++E
Sbjct: 54 FRLEIVSPEFSGMSRVARHRLVYGLLKDE 82
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 28.3 bits (60), Expect = 1.5
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +1
Query: 490 GEHSVVYGKT-AIAVSLGLRSSIVIKEVNTPHEPAVH-IHLPCVDLQETIPLEPTVKSLF 663
GE S YG T A ++L ++ ++ ++ HE ++ + + C P P + +
Sbjct: 22 GESSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHC---DANYPDAPPIVTFV 78
Query: 664 HPKLAPGITGKFSWRLPHKIDHDYHLRR 747
PG+ G+ PHKID H +R
Sbjct: 79 SRINLPGVDGETGKVNPHKIDCLRHWKR 106
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 691 GKFSWRLPHKIDHDYHLRRVEEYLHLIXPNFDSXPN 798
GKF + L +D+ + +E + PNFDS N
Sbjct: 54 GKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGN 89
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -3
Query: 649 LSAPMEWSPVDPRTANVCGLLVRVECLLPLSLW 551
L P+ DPR + L EC LP S+W
Sbjct: 179 LHRPLSAQSTDPRPTRIFVLGATKECSLPPSIW 211
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 222 LVNTLLQEELKTIHAFTQKTLTVDQWKTQ*CILFNTMQ*SKSISFLLFIIPCLRSSQFRV 401
LV +L++ELK + + + TQ L ++ + + F++F++P + Q
Sbjct: 287 LVKQILEKELKELPVACYSIINLHDSLTQFPNLDFILKTTALVLFIIFLVPSFKKLQNEE 346
Query: 402 CLLH 413
+LH
Sbjct: 347 SILH 350
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 6.2
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Frame = +1
Query: 526 AVSLGLRSSIVIKEVNTPHEPAVHIHLPCVDLQET---IPLEPTVKSLFHPKLAPGITGK 696
A LG+R S K + T V+ +L V +E I + + S FH L
Sbjct: 171 AYVLGVRQSTQAKMLRTKR---VYEYLIKVSYEENTFFIARKYSDFSHFHHLLLKSYPNA 227
Query: 697 FSWRLPHKIDHDYHLRRVEEYLHLIXPNFDSXPNN 801
+ RLP K DHD +L E+ P+ S N+
Sbjct: 228 YVPRLPPKDDHDTYLNSSEDSTLSPLPSRSSDTND 262
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 712 PHKIDHDYHLRRVEEYLH 765
P IDHD H++R+ E L+
Sbjct: 22 PDPIDHDLHVQRLRELLY 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,723,193
Number of Sequences: 5004
Number of extensions: 81235
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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