Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_K17
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    30   0.30 
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    29   0.52 
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac...    29   0.68 
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    28   1.2  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    28   1.6  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    26   6.4  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    26   6.4  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    26   6.4  

>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -3

Query: 229 LEQEIFLNYS*DKILHIWNGQLILNSL 149
           L ++IF+  S DK++ IWNG+ ++ S+
Sbjct: 146 LGEDIFITGSADKLIKIWNGEKLVKSI 172


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = -1

Query: 654 LTNFFTRIHHTTWYSPLSSVT------PFYSYKL*YRFIIYTHSHISIVKSF 517
           +TN   +I +  W +PLSS T      P++  K+ + F I  HS +   K F
Sbjct: 179 ITNMCQQIQYLLWLTPLSSKTIVGYSWPYFIAKILFAFSIIFHSGVFSYKLF 230


>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 205

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 613 IPGGMVDPGEKVSETAIREFKEE 681
           IP G+VD  E   + AIRE +EE
Sbjct: 87  IPAGLVDSKESCEDAAIRELREE 109


>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 520 RLDNGNMAVGVNNKPILQFIAIKRGDTGEWAIPGGMVDPGEKVSETAIREFKEE 681
           RL  G +A+  + + +L   + K+  +  W +P G  +  E V + A+RE  EE
Sbjct: 42  RLAAGVVALSADKRKVLLVSSAKKHPS--WVVPKGGWEADESVQQAALREGWEE 93


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 589 RGDTGEWAIPGGMVDPGEKVSETAIREFKEEA 684
           R   G +A   G ++PGE + E  +RE  EE+
Sbjct: 248 RHPKGLYACLAGFLEPGESLEEAVVRETYEES 279


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +1

Query: 379 RVSYNGPYQIVNGF-PLNPLGRTGICGRGVLGRWGPNHAADPIISRWKRLDNGNMAVGVN 555
           RV+  G Y+  +GF  + P+G T +    ++    P  + + ++ R K L     AV  N
Sbjct: 410 RVALLGRYE--HGFMSMIPVGATNV--GSIVINCDPTLSTNRLVLRKKSLGTFQEAVYKN 465

Query: 556 NKPILQFIAIKRGD 597
             P+L  + + RG+
Sbjct: 466 ASPVLDGMPVSRGE 479


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 364 DGNISRVSYNGPYQIVNG 417
           DGN+ R++Y+G   + NG
Sbjct: 197 DGNVQRLTYDGTVDVFNG 214


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
 Frame = -2

Query: 692 ELRASSLNSLIAVSLTFSPGSTIPPGIA---HSPVS----PRFIAINC-----NIGLLFT 549
           +L A++  + +AV+    P ST+PPG +    +P S    P  IA        N+ L+  
Sbjct: 192 KLAAAAKKNKVAVT----PQSTLPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGA 247

Query: 548 PTAIFPLSSLFQRLIIGSAA*LGPHRPKTPRPQIPVRPRG 429
            TA+ PLS     ++  +AA   P  P  P   +P+ P G
Sbjct: 248 TTAVPPLS--IPNVLPFTAAQHFPGMPAMPMMNVPMGPGG 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,433
Number of Sequences: 5004
Number of extensions: 68119
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)