Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_K16
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    27   3.9  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   5.1  
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar...    25   9.0  

>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 496 HLNNLR*FRV*NDSSEHDRRYITQNSYIKAS 588
           H+NN R FR+   SSE+D  YI   + +  S
Sbjct: 164 HMNNKRHFRLDPKSSEYDEFYIINYASVTKS 194


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 762  GAPGAGTPSXSSPNAGSSLLPSHTKTESFIRSVT 661
            GAPG G  S +  N  +S  PS+  +   ++SV+
Sbjct: 1148 GAPGLGANSTNGSNFPASTTPSYENSNRRLQSVS 1181


>SPBC1604.16c |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 705 LPSHTKTESFIRSVTTRHIISVLHISNSWTRHLL 604
           +P+  K   F +S+T  H++S  HISN +  HLL
Sbjct: 80  IPNSKKINHF-KSMT--HLLSSQHISNKFQPHLL 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,013
Number of Sequences: 5004
Number of extensions: 63087
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)