Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_K12
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 93 1e-19
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 80 1e-15
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 79 3e-15
07_01_1001 - 8460467-8460799 65 3e-11
07_03_0321 + 16757414-16757743 63 1e-10
01_06_0098 - 26416768-26416998 32 0.38
08_02_1093 - 24271826-24273427 29 2.0
12_01_0090 + 717524-719080 29 3.5
06_03_0854 + 25400855-25403741,25406174-25407708 29 3.5
11_06_0264 - 21785450-21786928 27 8.2
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 93.1 bits (221), Expect = 1e-19
Identities = 41/70 (58%), Positives = 59/70 (84%)
Frame = +1
Query: 91 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 270
M+ +AAYLLAVLGG T+P+A D++ IL SVG+EA+ E+L+ +++EL GKD+ ++IAAGRE
Sbjct: 1 MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGRE 60
Query: 271 KLSSMPVGGG 300
K +S+P GGG
Sbjct: 61 KFASVPSGGG 70
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 80.2 bits (189), Expect = 1e-15
Identities = 34/71 (47%), Positives = 53/71 (74%)
Frame = +1
Query: 88 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGR 267
+M++++AYLLA L G P+A D+ IL SVG E D K++ ++++L GKD+ ++IA+GR
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGR 252
Query: 268 EKLSSMPVGGG 300
EK +S+P GGG
Sbjct: 253 EKFASVPCGGG 263
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 79.0 bits (186), Expect = 3e-15
Identities = 33/70 (47%), Positives = 53/70 (75%)
Frame = +1
Query: 91 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 270
M++++AYL+A L G ++P A D+ IL SVG E D K++ ++++++GKD+ +LIA GRE
Sbjct: 1 MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGRE 60
Query: 271 KLSSMPVGGG 300
K +S+P GGG
Sbjct: 61 KFASVPSGGG 70
>07_01_1001 - 8460467-8460799
Length = 110
Score = 65.3 bits (152), Expect = 3e-11
Identities = 30/68 (44%), Positives = 45/68 (66%)
Frame = +1
Query: 91 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 270
MR+VAAYL+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60
Query: 271 KLSSMPVG 294
L+ VG
Sbjct: 61 MLAFGGVG 68
>07_03_0321 + 16757414-16757743
Length = 109
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/63 (44%), Positives = 43/63 (68%)
Frame = +1
Query: 91 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 270
MR+VAAYL+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60
Query: 271 KLS 279
L+
Sbjct: 61 MLA 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 142 PAAADVEKILSSVGIEADAEKLKKVITELNGKD 240
P V KI+ +V IEAD+ + K ++ L GKD
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>08_02_1093 - 24271826-24273427
Length = 533
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 88 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGR 267
+ R AA +AV G+TT AAA + SS G + ++ + L +D +A R
Sbjct: 3 RKREAAAAAVAVADGETTTAAARADSSSSSEGGSVCDDVVRNIFARLPARDAVASMALSR 62
>12_01_0090 + 717524-719080
Length = 518
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -3
Query: 296 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIF 162
PP + S P ++ S+S SS + + ++S S+PT L F
Sbjct: 60 PPAVLSPSLVCPVIVAFSSSQAPSSALLLFNHASSCSLPTPLPTF 104
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -3
Query: 299 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPP 126
PPP I + A +S P+S+V + L+ SASA+ F+ + A +PP
Sbjct: 1120 PPPAPIPAATPAKALVSAPAPAPISTVSSTLAASASAA-----AAFAPAPVAAEAIPP 1172
>11_06_0264 - 21785450-21786928
Length = 492
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 299 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTE 174
PPP + + S AIS + V FL S++A IPTE
Sbjct: 384 PPPPPLATAASTATAISVAGLGGCGDVALFLGKSSAACIPTE 425
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,885,749
Number of Sequences: 37544
Number of extensions: 169294
Number of successful extensions: 527
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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