Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_K09
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   2.0  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    27   2.7  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    27   2.7  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    26   6.2  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   8.2  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   8.2  
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni...    25   8.2  

>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 398 ITDPVTGKKVSK-EQYKEDIERQTELYGRLKSTFNYSKAP 514
           + DPVTG++VSK E  K + +R  EL    K     + AP
Sbjct: 17  VLDPVTGEQVSKTELKKREKQRARELAKAKKQAEKAASAP 56


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
 Frame = +2

Query: 290 EKICKTGDIVLIQALPEKLTKLITH-EIKEVVYPFGDITDPVTGKKVSKEQYKEDIERQT 466
           E++ K G+I+     P++++ +I + ++   +  F +I +   G + +  + +E  E   
Sbjct: 91  EEVDKDGNIISASVAPQRISSVIDYADVFRSLPGFKNIENG--GNRDTSSRIEELSEE-- 146

Query: 467 ELYGRLKSTFNYSKAPPRGWQDGKKDFTSKPT 562
           E+    K+  NY KAP  G      +FTS PT
Sbjct: 147 EINDSTKN-INY-KAPEMGSLPSNTEFTSTPT 176


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -3

Query: 186 VGTHCPSKRNFLAASATFLDISWLFF**FVL---LYSCILKIFLN 61
           VG HCP  R  +A+ +  + + W+ F   V+    +SC L  F++
Sbjct: 62  VGLHCPFHRRGIASLSVCVALHWIAFSCSVMCHFAWSCALPCFVD 106


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
 Frame = +2

Query: 395 DITDPVTGKKVSKEQYKEDIERQT-ELYGRLKSTFNYSKAPPR----GWQDGKKDFTSKP 559
           D T   T  K S+E     ++  + EL  R+K+  + S  P +    G  D K + T+KP
Sbjct: 94  DSTGVKTSGKRSRESSTVTVDGDSHELPSRIKTQKSESPIPQQVKRDGTTDAKNEETTKP 153

Query: 560 TYTKFHVFDENDP 598
              +   F+E  P
Sbjct: 154 ENNEKDDFEEEPP 166


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 431 KEQYKEDIERQTELYGRLKSTFNYSKAPPRGWQDGKKDFTSKPTYTKFH 577
           +EQY++ IE+  +LY R     + ++A  +  +  +K    K    ++H
Sbjct: 135 EEQYRKGIEKMAKLYEREHDRRSIAEAEKKYVESAQKITLLKQALKRYH 183


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 370 KRSRLSVWRYNRPCYRQ 420
           KR++L  W   +PCY Q
Sbjct: 90  KRNKLIAWMRKKPCYEQ 106


>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
           Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = +2

Query: 311 DIVLIQALPEKLTKLITHEIKEVVYPFGDITDPVTGKKVSKEQYKE 448
           D +++   P+KL + +     + V+P  ++ +   G+K   E+ K+
Sbjct: 196 DQMVLMQFPDKLPRFMGDADVDPVWPSSEVKEEEAGEKTDVEEKKD 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,629
Number of Sequences: 5004
Number of extensions: 60775
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)