Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_K07
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0754 - 31515939-31515998,31516372-31516479,31516575-315166...    42   4e-04
02_05_0623 + 30446420-30446525,30446635-30446715,30446811-304469...    35   0.054
10_06_0099 - 10677024-10677073,10677894-10677998,10678254-106783...    28   6.2  

>02_05_0754 -
           31515939-31515998,31516372-31516479,31516575-31516695,
           31517309-31517370
          Length = 116

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 18/51 (35%), Positives = 33/51 (64%)
 Frame = +2

Query: 332 LSPIYFLILFGLYSVSVILFRVLTFNNCEEAAKELQREIIEAKKDLHERGL 484
           L PIY ++  G Y + ++ F ++ F  C + A  LQ++I+EAK+ L ++G+
Sbjct: 61  LLPIYLVVALGCYGLFMVGFGLMFFPTCPQEAVLLQQDILEAKEFLSKKGV 111


>02_05_0623 +
           30446420-30446525,30446635-30446715,30446811-30446987,
           30447629-30447799,30448239-30448448,30448634-30448722,
           30449318-30450010
          Length = 508

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 22/56 (39%), Positives = 31/56 (55%)
 Frame = -3

Query: 480 PLSCKSFLASIISLCSSFAASSQLLNVKTLKSITLTEYKPKSIRKYMGDKTI*CMF 313
           P S  S+ A ++S   S AASS +  + +LKS T T    KS+ KY G  T+  +F
Sbjct: 27  PASASSYPAKVVSGFLSNAASSVMKRLWSLKSTTKTGSGGKSMVKYEGGYTVETVF 82


>10_06_0099 -
           10677024-10677073,10677894-10677998,10678254-10678315,
           10678694-10679197,10679695-10680356,10680695-10680793,
           10680881-10681110,10681227-10681278,10681391-10681577,
           10681661-10681873,10682006-10682175,10683455-10683730,
           10684188-10684643,10685527-10685766,10687517-10687771
          Length = 1186

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 356 LFGLYSVSVILFRVLTFNN-CEEAAKELQREIIEAKKDLHERGLRW*TFHYGLN 514
           +F      V+  R+    N C+E A+ LQ +   +   +H   +   TFH+G N
Sbjct: 258 IFSSMHADVVARRIENLENMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKN 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,550,562
Number of Sequences: 37544
Number of extensions: 215230
Number of successful extensions: 440
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)