Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_K04
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   4.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   4.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.3  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   8.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 790 GMITIFANIIRQEQIVGLWRG 852
           GMI  F  I +++  +  WRG
Sbjct: 55  GMIDCFVRIPKEQGFLSYWRG 75


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 790 GMITIFANIIRQEQIVGLWRG 852
           GMI  F  I +++  +  WRG
Sbjct: 55  GMIDCFVRIPKEQGFLSYWRG 75


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 864 GGYHPSPQSXDLLLTDYVS 808
           GG+HPS +S  L+L  + +
Sbjct: 571 GGWHPSDRSARLMLQPWAN 589


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 23  TIKQKCQLSNLNYTNKCKILRIKKRITYY 109
           +I+QK Q        +C ILRI +    Y
Sbjct: 45  SIQQKIQYRPCTKNQQCSILRINRNRCQY 73


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 23  TIKQKCQLSNLNYTNKCKILRIKKRITYY 109
           +I+QK Q        +C ILRI +    Y
Sbjct: 94  SIQQKIQYRPCTKNQQCSILRINRNRCQY 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,164
Number of Sequences: 438
Number of extensions: 5445
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)