Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_K02
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.10
07_03_1747 + 29188568-29188715,29188793-29189541 31 0.94
12_01_0524 - 4167867-4168445 29 2.2
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 3.8
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 5.0
04_01_0530 - 6928528-6929500,6929514-6930964 28 5.0
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 5.0
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 5.0
08_02_0813 + 21459776-21461128 28 6.6
07_03_1400 + 26287124-26287298,26287925-26288007,26288141-262882... 28 6.6
01_06_1147 + 34892415-34893702,34894051-34894676 28 6.6
07_01_0069 + 505291-505327,505726-505956,506317-506652,507025-50... 27 8.7
06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575 27 8.7
03_02_0111 + 5688649-5688942 27 8.7
02_01_0054 - 404464-405152,406087-406618 27 8.7
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.10
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 311 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 147
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 364 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 516
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 308 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 129
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 128 CEERVDHEGQ*C 93
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 209 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 325
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 215 VHRANTGRSSNELDRQTTELERRGVG 292
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 44 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 184
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 393 GRGERSPRRWLQPRLAVPRQASTSVPRTP 307
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 390 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 268
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
>08_02_0813 + 21459776-21461128
Length = 450
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +3
Query: 282 GEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQ 461
G++ C WL + R P LL+ TT R V+ W K+ IS P+S++
Sbjct: 238 GDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSIE 289
Query: 462 L 464
L
Sbjct: 290 L 290
>07_03_1400 +
26287124-26287298,26287925-26288007,26288141-26288270,
26288369-26288442,26288797-26288883,26288976-26289100,
26289232-26289292,26289606-26289683,26289785-26289890,
26289978-26290123,26290264-26290380
Length = 393
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +3
Query: 450 ISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 539
++++ W ND+++C F+ SR +S+ M+
Sbjct: 83 VNLEGGGWCNDVKSCVFRKSSRRGSSNHME 112
>01_06_1147 + 34892415-34893702,34894051-34894676
Length = 637
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 313 PRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG 423
P N+ G + C LQP PGT S P T+PSPG
Sbjct: 210 PANSFLGNAFLCGFPLQPCPGTAPS-PSPSPTSPSPG 245
>07_01_0069 +
505291-505327,505726-505956,506317-506652,507025-507372,
507735-508594,508902-508971,509157-509371,509477-509537,
509606-509715,510644-510694,510794-510916
Length = 813
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -3
Query: 172 LTTILESGGESRSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNKNNISRR 17
+ T + ES + E ++RD+DVA S S V R K+ S+R
Sbjct: 122 VVTDTDLANESGNGCTHGEGVLRDADVASSRSGNDLTPDVDRTLGKSKASKR 173
>06_03_1226 - 28541522-28541755,28543095-28543740,28544017-28545575
Length = 812
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +3
Query: 57 CAIASAAECENATSLSLM--IDSLL-ATYDRDSPPDSKIVVNLTLHLRHANIRESES 218
CA+ AEC+ +TS SL +D+L A YD D D L +R++ I + +
Sbjct: 50 CAVLRDAECKQSTSHSLQEWLDNLKDAVYDIDDVLDDVSTEALEQEVRNSFIHRTRN 106
>03_02_0111 + 5688649-5688942
Length = 97
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 286 SGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG*SAWT 438
+ AAA P G + + PPP L+ P+Y + AP SA+T
Sbjct: 33 TAAAAAATGPHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83
>02_01_0054 - 404464-405152,406087-406618
Length = 406
Score = 27.5 bits (58), Expect = 8.7
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Frame = -2
Query: 323 AFRGHQPSAAAPLPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDY 165
A G + A V + +VDP L K +YS G L L ++ S G
Sbjct: 258 ACEGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGP 317
Query: 164 DFGVGGGVPIVRCEERVDHEG 102
D G GGG R RV EG
Sbjct: 318 DGGAGGGNLTARLLPRVRTEG 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,232,769
Number of Sequences: 37544
Number of extensions: 447842
Number of successful extensions: 1465
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -