Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_K01
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...   325   4e-90
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    27   2.5  
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    27   2.5  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    27   3.3  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    27   4.4  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   5.8  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   7.6  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score =  325 bits (799), Expect = 4e-90
 Identities = 146/230 (63%), Positives = 183/230 (79%), Gaps = 2/230 (0%)
 Frame = +2

Query: 155 KRVVAAKPVVEMDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSA 334
           +++    PVVEMDGDEMTR++W  I+E+L+ PY+ +   Y+DLG+  RD T+DQ+T+D+A
Sbjct: 12  QKITVKNPVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAA 71

Query: 335 HAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVV 514
            AILK++VGIKCATITPDE RV+E+ LKKMW SPNGTIRNIL GTVFREPIL ++IP+ +
Sbjct: 72  KAILKNDVGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPILIKNIPKYI 131

Query: 515 PGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRV--LYDFKTPGVAMG 688
           PGWT PI IGRHA GDQYK+ D V   PGK+EL +T +   + +    +Y+F   GVAM 
Sbjct: 132 PGWTNPICIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPSAKETYNVYEFNGSGVAMS 191

Query: 689 MYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEXVF 838
           MYNTD+SIR FAHSSFQ+ALQKK PLYLSTKNTILK+YDGRFKD F+ V+
Sbjct: 192 MYNTDDSIRGFAHSSFQMALQKKMPLYLSTKNTILKKYDGRFKDTFQEVY 241


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 308 DDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWL 430
           DD VT   + AIL+H V     +  P E+ V E +  ++W+
Sbjct: 56  DDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWM 96


>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 751 EKMASIPVYEEYHFETLRWSFQ 816
           ++M  +P +E+YHF+TL   FQ
Sbjct: 156 QQMNLMPTFEKYHFKTLNKLFQ 177


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 747 KAT*KLEWAKDRIDSSVLYMPIATPGVLKSYNTR 646
           KAT K EW K++ID   L   I T   LK+Y  R
Sbjct: 300 KATEKREWVKEKIDLESLLGTIQTN--LKTYQLR 331


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 480 NRYCVRVSRGL--CLVGRNLL**AVMRTATNTRRKILLYRNPERLNLFTLHEMVRQ 641
           N  C+ +  G   C V RNLL   V R  T      + Y NP R +LFT  +  R+
Sbjct: 335 NSKCLLLGAGTLGCGVARNLLSWGV-RHVTFVDYSTVSYSNPVRQSLFTFEDCKRK 389


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 776 TKNTILKRYDGRFKDIFE 829
           T+ T+L   DG+FKDIF+
Sbjct: 414 TQETLLGLLDGKFKDIFD 431


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +2

Query: 71  RNMANTSTTKILKCVNQFASLTRNYGTAKRVVAAKPVVEMDGDEMTRIMWAKIKERL 241
           R + N S+++I         L +  GT + ++AAK +VE  GD +  I   K K ++
Sbjct: 516 RELLNLSSSEISNGKKTSTPLVKVCGT-RSLLAAKTIVESGGDLIGLIFVEKSKRKV 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,578,126
Number of Sequences: 5004
Number of extensions: 76296
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)