Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_K01
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 336 9e-93
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 330 1e-90
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 289 2e-78
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 126 2e-54
10_01_0316 + 3479574-3482679,3482766-3483127 29 3.5
10_01_0318 + 3493913-3496976,3497064-3497392 29 6.1
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 336 bits (827), Expect = 9e-93
Identities = 151/227 (66%), Positives = 182/227 (80%)
Frame = +2
Query: 158 RVVAAKPVVEMDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAH 337
++ A P+VEMDGDEMTR+ W IK++LIFP++++D YFDLGLP+RD TDD+VT+++A
Sbjct: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPYRDQTDDKVTVEAAE 64
Query: 338 AILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVP 517
A LK+NV IKCATITPDE RV+EF LK MW SPNGTIRNIL GTVFREPI+C++IPR+VP
Sbjct: 65 ATLKYNVAIKCATITPDEARVKEFSLKSMWKSPNGTIRNILNGTVFREPIICKNIPRLVP 124
Query: 518 GWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYN 697
GWTKPI IGRHA GDQY+A D V+ PGK++LVY +D E V GVA MYN
Sbjct: 125 GWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVYEGKDEEIELEVFNFTGAGGVAQSMYN 184
Query: 698 TDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEXVF 838
TDESIRSFA +S A +KKWPLYLSTKNTILK+YDGRFKDIF+ V+
Sbjct: 185 TDESIRSFAEASMATAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVY 231
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 330 bits (810), Expect = 1e-90
Identities = 146/228 (64%), Positives = 184/228 (80%)
Frame = +2
Query: 155 KRVVAAKPVVEMDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSA 334
+++ A P+VEMDGDEMTRI W IK++LIFP++ +D Y+DLG+ HRDATDD+VT+++A
Sbjct: 4 EKIKVANPIVEMDGDEMTRIFWQSIKDKLIFPFLDLDIKYYDLGVLHRDATDDKVTVEAA 63
Query: 335 HAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVV 514
A LK+NV IKCATITPDE RV+EF LK+MW SPNGTIRNI+ GTVFREPI+C+++PR+V
Sbjct: 64 EATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNIINGTVFREPIICKNVPRLV 123
Query: 515 PGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMY 694
PGWTKPI IGRHA GDQY+A D V+ PGK++LV+ +D + V GVA+ MY
Sbjct: 124 PGWTKPICIGRHAFGDQYRATDAVLKGPGKLKLVFEGKDEQIDLEVFNFTGAGGVALSMY 183
Query: 695 NTDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEXVF 838
NTDESIR+FA +S A +KKWPLYLSTKNTILK+YDGRFKDIF+ V+
Sbjct: 184 NTDESIRAFAEASMTTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVY 231
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 289 bits (708), Expect = 2e-78
Identities = 141/235 (60%), Positives = 171/235 (72%), Gaps = 18/235 (7%)
Frame = +2
Query: 179 VVEMDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNV 358
V GDEMTR++W IK++LIFP++ +D Y+DLGLP+RDAT D+VTI+SA A LK+NV
Sbjct: 37 VTRNSGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTIESAEATLKYNV 96
Query: 359 GIKCATITP------------------DEQRVEEFKLKKMWLSPNGTIRNILGGTVFREP 484
IKCATITP DE RV+EF L MW SPNGTIRNIL GTVFREP
Sbjct: 97 AIKCATITPVLDTQFKFDFGRTIHEPTDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREP 156
Query: 485 ILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDF 664
I+C++IPR+VPGW KPI IGRHA GDQY+A D V+ PGK++LV+ R+ E V
Sbjct: 157 IICKNIPRLVPGWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVFDGREEQIELDVFNFT 216
Query: 665 KTPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFE 829
GVA+ MYNTDESI +FA +S +A QK+WPLYLSTKNTILK+YDGRFKDIF+
Sbjct: 217 GAGGVALSMYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQ 271
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 126 bits (303), Expect(2) = 2e-54
Identities = 62/101 (61%), Positives = 77/101 (76%), Gaps = 2/101 (1%)
Frame = +2
Query: 239 LIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLK 418
LIFPY+++D YFDLGL +RDATDD+VT++SA A L T+T DE RV+EFKLK
Sbjct: 101 LIFPYLELDVKYFDLGLLNRDATDDKVTVESAEATLDLYSNSFFMTLT-DETRVKEFKLK 159
Query: 419 KMWLSPNGTIRNILGGTVFREPILCQSIPRV--VPGWTKPI 535
MW SPNGTIRNIL GTVFREPILC+++PR+ VP +P+
Sbjct: 160 SMWRSPNGTIRNILNGTVFREPILCKNVPRILSVPDGAEPV 200
Score = 105 bits (252), Expect(2) = 2e-54
Identities = 46/62 (74%), Positives = 54/62 (87%)
Frame = +2
Query: 653 LYDFKTPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEX 832
+Y+FK PGVA+ MYN DESIR+FA SS +AL KKWPLYLSTKNTILK+YDGRFKDIF+
Sbjct: 204 VYNFKGPGVALSMYNVDESIRAFAESSMAMALSKKWPLYLSTKNTILKKYDGRFKDIFQE 263
Query: 833 VF 838
V+
Sbjct: 264 VY 265
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 443 TIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQ 577
++RN+ E + + I R W++ VIGR HG Y+ +
Sbjct: 842 SMRNLDSTEELPEDLTYEDILRATDNWSEKYVIGRGRHGTVYRTE 886
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 443 TIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQ 577
++RN+ E + + I R W++ VIGR HG Y+ +
Sbjct: 828 SVRNMDSTEELPEELTYEDILRGTDNWSEKYVIGRGRHGTVYRTE 872
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,309,037
Number of Sequences: 37544
Number of extensions: 501875
Number of successful extensions: 1140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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