Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_J24
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    29   0.54 
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    27   2.9  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    27   3.8  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   5.0  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   5.0  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   6.7  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   6.7  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    25   8.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   8.8  
SPCC1393.14 |||nuclear telomere cap complex subunit Ten1|Schizos...    25   8.8  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   8.8  

>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -1

Query: 603 RLCER--DYRCQRIHQPMVCCYCCTN*HNCQ*NSPSHCSWLETCYHF 469
           R CE+  +Y+C R H    C  C    + C      HC W + C  F
Sbjct: 97  RFCEKCQEYKCDRSHH---CSQC----NKCILRMDHHCMWFKNCVGF 136


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 162 FERHYLILKDKFVNVENYHILMFSCHVRRYYNLSPVGILSIFLSFN 25
           F   +L+L DK+ + +  HI++   +++  Y  SP G  +I +S N
Sbjct: 261 FRNGWLVLYDKYRHEQPLHIVVPEKNLKSLYLSSP-GTFNILISIN 305


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 484 LQPATMRWRILLTIVSVCTAIAAYHWLMDPL 576
           LQ       IL  +  VC A+AA H+L  PL
Sbjct: 153 LQHRLTEGEILKILADVCDAVAAMHYLDPPL 183


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 480 MSPTSYNEMENSTDNCVSLYSNSSIPLVDGSS 575
           MS  S NE   +  N  S Y N+S+P +D ++
Sbjct: 417 MSKLSLNEQPAAPSNSNSQYMNTSMPTLDSTN 448


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 483 SPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSLAHTVFVESSLF 623
           S +S  ++   T + +S  S S  P  DGS D+  +AH  +  S  F
Sbjct: 241 SHSSIGDLTTITQSSISSGSGSFKPSWDGSFDSSLMAHQSYGTSPAF 287


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 271 KSMKRKINASCYLFT-KQRISIAGHNLMTNTNHHKQFVRATLFNFKRQI 128
           KS+ + ++    LF   Q I    ++  TNT+H    + A   +FKRQ+
Sbjct: 486 KSLYKNVDQPQLLFQFYQSIMDLNNDCFTNTSHLYDVLNAQRISFKRQL 534


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 454 ERRLTEVIACLQPATMRWRILLTIVSVCTAIAAYHWLMDPLTPV 585
           +RRL   I         W  LL +V VC  +     L+ P+ PV
Sbjct: 10  QRRLVREINKFSSFESNWLFLLFLVRVCRQLKTVTVLIVPVLPV 53


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -3

Query: 403 GLFTKIVTTKLYIKNRK*F*RFAFLDLM*KRYIVNNLNTN--RPKFKSMKRKI 251
           GL   ++ TKL +  R  +  +AF+ L+   +    LNTN   P FK++K  +
Sbjct: 48  GLKPPLIATKLEVPKRWFWHFYAFISLLNPLFTFFILNTNFPIPIFKNIKEDL 100


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +3

Query: 423 SSHNYRFESF*ASFN*SDSM---SPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSLA 593
           +S+NY   S  +S   S S    S TS + + +S+ N  +  S +S  L   S+ + SLA
Sbjct: 61  TSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLA 120

Query: 594 HTVFVESSL 620
            +    SSL
Sbjct: 121 SSSTTSSSL 129


>SPCC1393.14 |||nuclear telomere cap complex subunit
           Ten1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 102

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 525 CVSLYSNSSIPLVDGSSD-TCSL 590
           CV  Y N  + L+DGSS  TC +
Sbjct: 26  CVQSYKNGILRLIDGSSSVTCDV 48


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -1

Query: 489 LETCYHFS*TTLKSFQ-ICNYDYSV--SLIIKGYL 394
           +E C+HFS T L   + +  YD+ +  S++  GYL
Sbjct: 423 IEHCFHFSQTVLSGLRYLQRYDWLLLRSIVFFGYL 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,597
Number of Sequences: 5004
Number of extensions: 53695
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)