Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_J24
(756 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021571-5|CAA16513.2| 140|Caenorhabditis elegans Hypothetical ... 71 9e-13
AL021571-6|CAN99719.1| 142|Caenorhabditis elegans Hypothetical ... 71 1e-12
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 29 4.7
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 29 4.7
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :... 29 4.7
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 29 4.7
AF491502-1|AAM09784.1| 116|Caenorhabditis elegans TRA-2 protein. 28 6.2
AF491501-1|AAM09783.1| 123|Caenorhabditis elegans TRA-2 protein. 28 6.2
AF491500-1|AAM09782.1| 120|Caenorhabditis elegans TRA-2 protein. 28 6.2
AF491496-1|AAM09778.1| 126|Caenorhabditis elegans TRA-2 protein. 28 6.2
AF491493-1|AAM09775.1| 115|Caenorhabditis elegans TRA-2 protein. 28 6.2
AF491491-1|AAM09773.1| 126|Caenorhabditis elegans TRA-2 protein. 28 6.2
>AL021571-5|CAA16513.2| 140|Caenorhabditis elegans Hypothetical
protein T19A6.3a protein.
Length = 140
Score = 70.9 bits (166), Expect = 9e-13
Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Frame = +1
Query: 439 DLKAFERRLTEVIACLQPATMRWRILLTIVSVCTAIAAYHWLMDP---LTPVVSLTQSLW 609
DLK FE+RLTEVI + P RWRI + I +V + + + + + + L
Sbjct: 18 DLKFFEKRLTEVITYMGPTCTRWRIAIVIFAVLVGVIGSKYFANEKIEIFQIPMIDMFLT 77
Query: 610 NHPFFAVTSTLLVLLFMI-GVHXKVVAPXIITARTRSILNDFXMSCDDTG 756
H F + + +LLF + GVH ++VAP I+ R R L+ F +SCD G
Sbjct: 78 THLDFTLCFFVGLLLFAVFGVHRRIVAPTIVARRCRDALSPFSLSCDHNG 127
>AL021571-6|CAN99719.1| 142|Caenorhabditis elegans Hypothetical
protein T19A6.3b protein.
Length = 142
Score = 70.5 bits (165), Expect = 1e-12
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Frame = +1
Query: 439 DLKAFERRLTEVIACLQPATMRWRILLTIVSVCTAIAAYHWLMDPLT-----PVVSLTQS 603
DLK FE+RLTEVI + P RWRI + I +V + + + L + +
Sbjct: 18 DLKFFEKRLTEVITYMGPTCTRWRIAIVIFAVLVGVIGSKYFANELQKIEIFQIPMIDMF 77
Query: 604 LWNHPFFAVTSTLLVLLFMI-GVHXKVVAPXIITARTRSILNDFXMSCDDTG 756
L H F + + +LLF + GVH ++VAP I+ R R L+ F +SCD G
Sbjct: 78 LTTHLDFTLCFFVGLLLFAVFGVHRRIVAPTIVARRCRDALSPFSLSCDHNG 129
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/73 (21%), Positives = 37/73 (50%)
Frame = -3
Query: 310 YIVNNLNTNRPKFKSMKRKINASCYLFTKQRISIAGHNLMTNTNHHKQFVRATLFNFKRQ 131
Y++NN++ + KF+ +N C+ K I+I + ++ N + +++ L +R
Sbjct: 84 YLLNNISNLKIKFRQKTYTLNDVCF---KPHITIFQQSSSSDQNEYPHYIQRLLLEMQR- 139
Query: 130 IC*C*KLSHINVF 92
+ C ++ +N F
Sbjct: 140 LSPCLIVTPLNCF 152
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/73 (21%), Positives = 37/73 (50%)
Frame = -3
Query: 310 YIVNNLNTNRPKFKSMKRKINASCYLFTKQRISIAGHNLMTNTNHHKQFVRATLFNFKRQ 131
Y++NN++ + KF+ +N C+ K I+I + ++ N + +++ L +R
Sbjct: 84 YLLNNISNLKIKFRQKTYTLNDVCF---KPHITIFQQSSSSDQNEYPHYIQRLLLEMQR- 139
Query: 130 IC*C*KLSHINVF 92
+ C ++ +N F
Sbjct: 140 LSPCLIVTPLNCF 152
>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform b
protein.
Length = 1147
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/73 (21%), Positives = 37/73 (50%)
Frame = -3
Query: 310 YIVNNLNTNRPKFKSMKRKINASCYLFTKQRISIAGHNLMTNTNHHKQFVRATLFNFKRQ 131
Y++NN++ + KF+ +N C+ K I+I + ++ N + +++ L +R
Sbjct: 84 YLLNNISNLKIKFRQKTYTLNDVCF---KPHITIFQQSSSSDQNEYPHYIQRLLLEMQR- 139
Query: 130 IC*C*KLSHINVF 92
+ C ++ +N F
Sbjct: 140 LSPCLIVTPLNCF 152
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/73 (21%), Positives = 37/73 (50%)
Frame = -3
Query: 310 YIVNNLNTNRPKFKSMKRKINASCYLFTKQRISIAGHNLMTNTNHHKQFVRATLFNFKRQ 131
Y++NN++ + KF+ +N C+ K I+I + ++ N + +++ L +R
Sbjct: 84 YLLNNISNLKIKFRQKTYTLNDVCF---KPHITIFQQSSSSDQNEYPHYIQRLLLEMQR- 139
Query: 130 IC*C*KLSHINVF 92
+ C ++ +N F
Sbjct: 140 LSPCLIVTPLNCF 152
>AF491502-1|AAM09784.1| 116|Caenorhabditis elegans TRA-2 protein.
Length = 116
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = -3
Query: 310 YIVNNLNTNRPKFKSMKRKINASCYLFTKQRISIAGHNLMTNTNHHKQFVRATLFNFKR 134
Y++NN++ + KF+ +N C+ K I+I + ++ N + +++ L +R
Sbjct: 60 YLLNNISNLKIKFRQKTYTLNDVCF---KPHITIFQQSSSSDQNEYPHYIQRLLLEMQR 115
>AF491501-1|AAM09783.1| 123|Caenorhabditis elegans TRA-2 protein.
Length = 123
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = -3
Query: 310 YIVNNLNTNRPKFKSMKRKINASCYLFTKQRISIAGHNLMTNTNHHKQFVRATLFNFKR 134
Y++NN++ + KF+ +N C+ K I+I + ++ N + +++ L +R
Sbjct: 65 YLLNNISNLKIKFRQKTYTLNDVCF---KPHITIFQQSSSSDQNEYPHYIQRLLLEMQR 120
>AF491500-1|AAM09782.1| 120|Caenorhabditis elegans TRA-2 protein.
Length = 120
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = -3
Query: 310 YIVNNLNTNRPKFKSMKRKINASCYLFTKQRISIAGHNLMTNTNHHKQFVRATLFNFKR 134
Y++NN++ + KF+ +N C+ K I+I + ++ N + +++ L +R
Sbjct: 62 YLLNNISNLKIKFRQKTYTLNDVCF---KPHITIFQQSSSSDQNEYPHYIQRLLLEMQR 117
>AF491496-1|AAM09778.1| 126|Caenorhabditis elegans TRA-2 protein.
Length = 126
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = -3
Query: 310 YIVNNLNTNRPKFKSMKRKINASCYLFTKQRISIAGHNLMTNTNHHKQFVRATLFNFKR 134
Y++NN++ + KF+ +N C+ K I+I + ++ N + +++ L +R
Sbjct: 70 YLLNNISNLKIKFRQKTYTLNDVCF---KPHITIFQQSSSSDQNEYPHYIQXLLLEMQR 125
>AF491493-1|AAM09775.1| 115|Caenorhabditis elegans TRA-2 protein.
Length = 115
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = -3
Query: 310 YIVNNLNTNRPKFKSMKRKINASCYLFTKQRISIAGHNLMTNTNHHKQFVRATLFNFKR 134
Y++NN++ + KF+ +N C+ K I+I + ++ N + +++ L +R
Sbjct: 58 YLLNNISNLKIKFRQKTYTLNDVCF---KPHITIFQQSSSSDQNEYPHYIQRLLLEMQR 113
>AF491491-1|AAM09773.1| 126|Caenorhabditis elegans TRA-2 protein.
Length = 126
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = -3
Query: 310 YIVNNLNTNRPKFKSMKRKINASCYLFTKQRISIAGHNLMTNTNHHKQFVRATLFNFKR 134
Y++NN++ + KF+ +N C+ K I+I + ++ N + +++ L +R
Sbjct: 70 YLLNNISNLKIKFRQKTYTLNDVCF---KPHITIFQQSSSSDQNEYPHYIQRLLLEMQR 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,212,167
Number of Sequences: 27780
Number of extensions: 301991
Number of successful extensions: 746
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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