Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_J23
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p...    30   1.9  
L11247-1|AAA28010.2|  484|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
           protein C34D4.14 protein.
          Length = 2761

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 545 TRPELPNMLLISKLNATGYTPEFLTIFQNSTSGVAR*SAFSTL 673
           T+PELPN  L+ K+      P F  IFQ S +G  R ++ S +
Sbjct: 526 TKPELPNPNLVRKV-LHQLLPIFCEIFQKSLNGSVRRTSLSLM 567


>L11247-1|AAA28010.2|  484|Caenorhabditis elegans Hypothetical
           protein F09G8.5 protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 553 RASEYAAYIKIECNRLYTGVFDNFPKLNLWSCAI 654
           + +E A YI+ +C+       +N  KLNLW C I
Sbjct: 103 KLTESAVYIRTKCS------LENVKKLNLWGCGI 130


>U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical
           protein D1014.7 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 496 YFASIDSYNLNTRYRMGIIVRCNKPYSFFTLC 401
           Y +  +  N    Y + I+ R NKP  +FT+C
Sbjct: 176 YISISEKLNETPEYSVPIVPRLNKPPHYFTVC 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,836,082
Number of Sequences: 27780
Number of extensions: 328179
Number of successful extensions: 885
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)