Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_J19
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 46 6e-06
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 42 1e-04
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 29 0.97
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 2.2
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 27 3.0
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.2
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 26 6.9
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 26 6.9
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 46.0 bits (104), Expect = 6e-06
Identities = 22/65 (33%), Positives = 40/65 (61%)
Frame = +1
Query: 577 QQPTIMTESITVPSWSCGRIIGSGGENVNDISHRSGARVKVESPKSTDKVAEHLXTFRGT 756
QQP + T++I++P+ G IIG GG +++I SG+++ + + + D+ E + T GT
Sbjct: 317 QQPKV-TQNISIPADMVGCIIGRGGSKISEIRRTSGSKISI-AKEPHDETGERMFTITGT 374
Query: 757 KEQIE 771
E+ E
Sbjct: 375 HEENE 379
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 41.9 bits (94), Expect = 1e-04
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 13/144 (9%)
Frame = +1
Query: 379 IEIHVPKSIVPALIGRNGSNIKDLQKKSGAQIHFKKFTDQDY------------DVCVVR 522
+ +++P LIG NG ++ L++K ++ F + D D V+R
Sbjct: 799 LRVNIPNDFHRQLIGSNGKYVRRLEEKFSVRVRFPREDDSSNSTGNELMKPTSPDEVVIR 858
Query: 523 GRADTTQLAETLIHDFIKQQPTIM-TESITVPSWSCGRIIGSGGENVNDISHRSGARVKV 699
G + A+ + + + + +I T +I +PS + R++G G V +I + ++ +
Sbjct: 859 GGKKSVAAAKQELLELYEYEKSIAYTSTIDIPSKAVSRVVGRNGSTVENIRTQFDVKIDI 918
Query: 700 ESPKSTDKVAEHLXTFRGTKEQIE 771
ST++ + RG K +E
Sbjct: 919 -GDVSTEETTP--VSVRGAKADVE 939
Score = 41.1 bits (92), Expect = 2e-04
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Frame = +1
Query: 316 VLKKDEEENDNKTVRITKI-----NTIE--IHVPKSIVPALIGRNGSNIKDLQKKSGAQI 474
VL+ D+E + R+ +I N +E I VP+ + ++IGR GS +D+++K+ +
Sbjct: 1013 VLRGDKEIVEALETRLLEIVEELKNQVEEKIEVPQRCISSIIGRMGSTRRDIERKTSTML 1072
Query: 475 HFKKFTDQDYDVCV-VRGRADTTQLAETLIHDFIKQQPTIMTESITVP 615
+ D + V + + G + + A+ +I + + Q T+ ITVP
Sbjct: 1073 NIPNVLDPEETVTITIVGSPENCEKAKEMIQEKVASQ---YTQMITVP 1117
Score = 35.9 bits (79), Expect = 0.006
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Frame = +1
Query: 415 LIGRNGSNIKDLQKKSGAQ---------IHFKKF-TDQDYDVCVVRGRADTTQLAETLIH 564
LIG NGS +++ K+ G I F ++++ + V+RG + + ET +
Sbjct: 970 LIGPNGSKLQNTIKECGGSTDKTETARLISFSNGNSEEERNSVVLRGDKEIVEALETRLL 1029
Query: 565 DFIKQQPTIMTESITVPSWSCGRIIGSGGENVNDISHRSGARVKVESPKSTDKVAEHLXT 744
+ +++ + E I VP IIG G DI ++ + + P D T
Sbjct: 1030 EIVEELKNQVEEKIEVPQRCISSIIGRMGSTRRDIERKTSTMLNI--PNVLDPEETVTIT 1087
Query: 745 FRGTKEQIE 771
G+ E E
Sbjct: 1088 IVGSPENCE 1096
Score = 34.3 bits (75), Expect = 0.020
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Frame = +1
Query: 343 DNKTVRITKINTIEIHVPKSIVPALIGRNGSNIKDLQKKSGAQIHFKK--FTDQDYDVCV 516
D K I + E P +IG+NGSN+ L++ G QI+ ++ Q V
Sbjct: 720 DAKNHEILHSHVEEFDFPAQYSKNVIGKNGSNVSSLREDLGVQINVEEGHIRIQGIKKNV 779
Query: 517 VRGRADTTQLAETLIHDFIKQQPTIMTESITVPSWSCGRIIGSGGENVNDISHRSGARVK 696
A E LI D TI+ + +P+ ++IGS G+ V + + RV+
Sbjct: 780 EETAARIKSQIEALIDD------TIL--RVNIPNDFHRQLIGSNGKYVRRLEEKFSVRVR 831
Score = 34.3 bits (75), Expect = 0.020
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Frame = +1
Query: 376 TIEIHVPKSIVPALIGRNGSNIKDLQKKSGAQIHFKKFTDQDYDVCVVRGRADTTQLAET 555
T I +P V ++GRNGS +++++ + +I + ++ VRG + A
Sbjct: 884 TSTIDIPSKAVSRVVGRNGSTVENIRTQFDVKIDIGDVSTEETTPVSVRGAKADVENAIK 943
Query: 556 LIHDFIKQQPTIMTESITVPSWSCGRIIGSGGENV-NDISHRSGARVKVESPK 711
I ++ ++ + I + +IG G + N I G+ K E+ +
Sbjct: 944 EISAIAEEVKNLVEKVIKIDREYHRYLIGPNGSKLQNTIKECGGSTDKTETAR 996
Score = 34.3 bits (75), Expect = 0.020
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +1
Query: 487 FTDQDYDVCVVRGRADTTQLAETLIHDFIKQQPTIMTESITVPSWSCGRIIGSGGENVND 666
+T VRG + + A + IKQ + +P+ RIIGSGG +N
Sbjct: 1173 YTGSSSSEWAVRGHKENVEKAIASLEKSIKQVMENCIAYLGIPTNLHRRIIGSGGSIINK 1232
Query: 667 ISHRSGARVKVESPKS 714
I R A+VK++ P++
Sbjct: 1233 I--RKIAQVKIDVPRT 1246
Score = 32.3 bits (70), Expect = 0.079
Identities = 17/93 (18%), Positives = 44/93 (47%)
Frame = +1
Query: 439 IKDLQKKSGAQIHFKKFTDQDYDVCVVRGRADTTQLAETLIHDFIKQQPTIMTESITVPS 618
++ + ++ +I+ + +++G+ + A I I ++ T +++ P
Sbjct: 177 VRTVMHQTSTRINVSTASKTKNTTFLIQGKTSAVKAARRQILKLIGRRET---KTMPCPV 233
Query: 619 WSCGRIIGSGGENVNDISHRSGARVKVESPKST 717
+ G IIG+ G+N+ I R+ R+++ +T
Sbjct: 234 FVVGAIIGTNGQNLKSIMDRTSTRIQIPKRNNT 266
Score = 29.9 bits (64), Expect = 0.42
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Frame = +1
Query: 415 LIGRNGSNIKDLQKKSGAQIHFKKFTDQDYDVCVVRGRADT-----------TQLAETLI 561
+IG G N++ L+ + ++ ++ ++D DV V AD LAE+ +
Sbjct: 578 VIGSKGKNLQKLRNEHQVELLVGEYGEEDPDVIVCYIGADDGKSPDQIQKELADLAES-V 636
Query: 562 HDFIKQQPTIMTESITVPSWSCGRIIGSGGENVNDISHRSGARVKVESPK 711
+ I++E I VPS I+G G +N I +S V V+ K
Sbjct: 637 KSSAEASAKIVSEIIQVPSVYHKHIVGPKGTTLNAIIGKSEENVIVQLGK 686
Score = 28.7 bits (61), Expect = 0.97
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 394 PKSIVPALIGRNGSNIKDLQKKSGAQIHFKK 486
P +V A+IG NG N+K + ++ +I K
Sbjct: 232 PVFVVGAIIGTNGQNLKSIMDRTSTRIQIPK 262
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 28.7 bits (61), Expect = 0.97
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +1
Query: 301 FVAYYVLKKDEEENDNKTVRIT--KIN-TIEIHVPKSIVPALIGRNGSNIKDLQKKSGAQ 471
F AYYVL+K DN V T +IN ++ P+ +V L +K +
Sbjct: 59 FAAYYVLRKPRTSPDNNYVEFTEKEINELVDDWKPEPLVAELTDVEKLELKSIPVLESVH 118
Query: 472 IHFK 483
+H K
Sbjct: 119 LHTK 122
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 400 SIVPALIGRNGSNIKDLQKKSGAQI 474
+ + LIG G +KD++ KSGA+I
Sbjct: 201 NFIGLLIGPRGHTLKDMEAKSGAKI 225
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -1
Query: 480 EMDLRTRFLLKVLNVGAIAT--NQSWNNAFRNMNFNCIYFSNPDCLVIVF 337
EM L+ F L N I T S + A + +N +YFS P CLV V+
Sbjct: 208 EMALQAFFTLTDDNDDGIITWIQNSSDFALKTINQIYLYFSYPSCLVRVY 257
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 26.2 bits (55), Expect = 5.2
Identities = 20/80 (25%), Positives = 34/80 (42%)
Frame = +1
Query: 505 DVCVVRGRADTTQLAETLIHDFIKQQPTIMTESITVPSWSCGRIIGSGGENVNDISHRSG 684
DV V +T+ K+Q + +++PS +I+ +G +N SH++G
Sbjct: 27 DVTVSELNKQKRSPGQTVSKRLHKKQRVVSNPDLSLPSSPVKQILRNGLQNSKYGSHKTG 86
Query: 685 ARVKVESPKSTDKVAEHLXT 744
+ S S D A H T
Sbjct: 87 LE-RSASCSSIDASANHSST 105
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 6.9
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -1
Query: 390 MNFNCIYFSNPDCLVIVFFFI 328
MN+ C+ F P +V++++F+
Sbjct: 482 MNWTCVVFGGPMLMVLIWWFV 502
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +3
Query: 75 IESNGSTXKLEWIGFKSKVCFALS*TREIGRVVKQTGKPIFPTLIRKVKLRTNNVIEHKI 254
+ S+ ST + + G K C + + GR++ +GK + P + N +EH +
Sbjct: 239 VSSHTSTKPVLYRGNSEKSCHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQN--LEH-V 295
Query: 255 SFAY 266
F Y
Sbjct: 296 GFYY 299
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,658
Number of Sequences: 5004
Number of extensions: 58028
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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