Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_J19
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   4.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 471 LRTRFLLKVLNVGAIATNQSWNNAFRNMN 385
           LR   LLK L++G    +  +N +FRN++
Sbjct: 450 LRDLALLKTLDLGENRISNFYNGSFRNLD 478


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 397 KSIVPALIGRNGSNIKDLQKKSGAQIHFKKFTDQDYDVCVVRGRAD 534
           KS + +L+       KDL KK+ +  H    T  +YD  + RG  D
Sbjct: 737 KSTIQSLMKLKSPEWKDLAKKARSVNHL--LTHHEYDYELSRGYID 780


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 229 QIMSLNTKLALPIALGLSLVTVTAFVAYYVL 321
           +IMS+N   A    LGL +VTV   + ++ L
Sbjct: 298 KIMSINNLTATAQMLGLYMVTVILGLLFHAL 328


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 174 KQTGKPIFPTLIRKVKLRTNNVIEHKISFAYCFGL 278
           K   + I     +K + +TNN++   +SF    GL
Sbjct: 267 KSGKRNIIDNSAQKTESKTNNIVVEGVSFGQSVGL 301


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 255 SFAYCFGLVPSDCNSICGLLCPQEXXXXXXXQDSQD 362
           ++ YC+ L P+  ++ C     QE        +S+D
Sbjct: 217 AYPYCYNLTPNQPSAQCEATTMQENDKMSWLFESED 252


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 250 KLALPIALGLSLVTVTAFVAYYVLKKDEEENDN 348
           KLA P A+ +  +T    +  Y++ K++ + D+
Sbjct: 274 KLACPPAIFIFDLTTDTLIRKYIIPKEQVKEDS 306


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 552 NFNT*LYQATANNYDRKYYCAKLVL 626
           N+N   Y+   NNY++K Y    ++
Sbjct: 323 NYNNNNYKYNYNNYNKKLYYKNYII 347


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 186  KPIFPTLIRKVKLRTNNVIEH 248
            KPI P   R +++ TN++  H
Sbjct: 1460 KPIIPEAARFIEVATNSITLH 1480


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 520 RGRADTTQLAETLIHDFIKQQPTIMTESITVP 615
           +G      LAE L+ +  K+   +M  +++VP
Sbjct: 679 KGMLSEKILAEPLVKEHFKKALELMNRAVSVP 710


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 158 NWSCCETNRKAYISHT 205
           N+SC   N  A +SHT
Sbjct: 682 NYSCVARNLAAEVSHT 697


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,702
Number of Sequences: 438
Number of extensions: 4159
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)