Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_J17
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    74   2e-14
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    30   0.36 
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    26   4.4  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   7.7  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 21/183 (11%)
 Frame = +3

Query: 192 YTFFGIRYAEPPLGPRRFQRPVRQYLASELNATRQCLP--CPQRDPYYPDR--------F 341
           + F GIRYA+PP+G  R++RPV      + +         CPQ  P+Y +R        F
Sbjct: 19  HRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQ--PFYNNRKNQVRNPDF 76

Query: 342 IGHEDCLCLNVFAPKMPGDERGCPVVFFVHGGNYKSGSASAY---GGQHLTQKDT----I 500
              EDCL LN++ P       G PV++F+HGG  + G+   Y     Q L    +    I
Sbjct: 77  KYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSPAKFI 136

Query: 501 LVTAQYRLGSLGYLS----TDEXDAAGNVGLFDLHAVMAWIQDYITFFGGDPTRXVVMGQ 668
           LV+  +RL   G+L+     +E   + N G +D    + W   +I  FGG+     V G 
Sbjct: 137 LVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIAVGGI 196

Query: 669 GSG 677
            +G
Sbjct: 197 SAG 199


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 416 YWATSFIARHFGSEYIETQTIFVTNKSVGIVRVSLRTR*ALSRGVQLTC*IL 261
           YW T F+    G ++I+ Q +F+T     I+  S  T   +S G +  C ++
Sbjct: 396 YWFTVFLVEKLGRKWIQLQGLFITGLMFAILAGSWDT---ISTGGRFACFVI 444


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +3

Query: 372 VFAPKMPGDERGCPVVFFVHGGNYKSG---SASAYGGQHLTQKDTILVTAQYRL 524
           +F P     E G P   + HGG +  G   + +++      Q   ++V   YRL
Sbjct: 88  IFRPHGTAPEGGWPCFLWFHGGGWVLGNINTENSFATHMCEQAKCVVVNVDYRL 141


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 392 RHFGSEYIETQTIFVTNKSV 333
           RHFG++Y++  T + TNK V
Sbjct: 442 RHFGAQYVDCDTDY-TNKGV 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,897
Number of Sequences: 5004
Number of extensions: 57128
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)