Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_J14
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    38   0.002
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    28   1.0  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    28   1.4  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   1.8  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   2.4  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    27   2.4  
SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr ...    26   4.2  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    26   5.5  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   7.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.3  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    25   7.3  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    25   7.3  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.7  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   9.7  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   9.7  

>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
 Frame = +3

Query: 162 ITKSDNEDAAPIERRFKKGINILEFKTKLELLTGGSPTTMKLKLYDKKNNF---VCDIED 332
           IT      +A  ERR      + + KTKL  + G      KL      +     V   E+
Sbjct: 4   ITLFIKSSSANAERRINPQWTVSQLKTKLVPIVGTPEQYQKLTYEPASSTVPGHVFTSEE 63

Query: 333 DEKLLGSYPIDDGMRIHVIDKFS--LVNDFATSDSAERFRLSEEDYEKKGDTLRSFLQRN 506
           +   LG + +     I V D     L  DF      +++ +  E YE + D++ ++ +RN
Sbjct: 64  ENLDLGEFKLQPLGTIVVEDTRPPHLRLDFDDLSQVDKYVMPREQYENRTDSVYAWKKRN 123

Query: 507 RLGKYN 524
           +LG++N
Sbjct: 124 QLGRFN 129


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = -3

Query: 451 DNRNLSALSEVAKSLTRENLSMTCILIPSSIGYEPRSFSSSSISHTKLFFLSYNFNFIVV 272
           D R+L  L +  +S       +  +LIP SI       ++++         S N +F   
Sbjct: 104 DTRSLVKLCKHVESSLASGSDVRSLLIPGSIDQSVLKVAATNNKDDSSAVKSANVSFPSS 163

Query: 271 GDPPVSSSNF 242
             PP S SNF
Sbjct: 164 STPPSSDSNF 173


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 237  KTKLELLTGGSPTTMKLKLYDKKNNFVCDIE 329
            KT LELL  G P +  ++LYD+ NN + +++
Sbjct: 1021 KTALELLDEG-PDSKDIRLYDQFNNLMKEVD 1050


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -3

Query: 499 CRKDLRVSPFFS*SSSDNRNLSALSEVAKSLTRENLSMTCILIPSSIGYEPRSFSSSSIS 320
           CR+ L  +   + SSS+N   S  S+  ++L  E  S  C L   SI  E  S S   + 
Sbjct: 328 CRRFLSANQRINYSSSENNPFSFTSQDVEALKDELSSNLCDLYLWSIDLEQISPSDCLLD 387

Query: 319 HTKLF 305
           +  LF
Sbjct: 388 NYSLF 392


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 271 GDPPVSSSNFVLNSRILIPFLN-LRSIGAASSLSDFVMCT 155
           G+P   SS+ ++N+R + PFL+    +G ASS  D  + T
Sbjct: 21  GNPEPPSSSILINTRPVNPFLSTFVYVGKASSSEDVSIST 60


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 231 EFKTKLELLTGGSPTTMKLKLYDKKNNFVC-DIEDDEKL 344
           E  TKL L TGG P  + +   D KN ++   I D  KL
Sbjct: 253 ESYTKLILATGGEPNKLPIPGLDSKNVYLLRSIADASKL 291


>SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 20/64 (31%), Positives = 33/64 (51%)
 Frame = +3

Query: 315 VCDIEDDEKLLGSYPIDDGMRIHVIDKFSLVNDFATSDSAERFRLSEEDYEKKGDTLRSF 494
           + D +++ +LL     DD   + V D F  V+     D  E+   SEE  EK+ D LRS 
Sbjct: 41  IVDAKNECELLDEDDGDDIPALKVGDAFFQVSLPVLLDQLEQ---SEESLEKQVDVLRSS 97

Query: 495 LQRN 506
           ++++
Sbjct: 98  MEKD 101


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 457 SSDNRNLSALSEVAKSLTRENLSMTCILIPSS 362
           S DN++ S+   VA S T E++S TC    SS
Sbjct: 219 SFDNKSHSSTCAVATSGTGEHISNTCFACRSS 250


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 237 KTKLELLTGGSPTTMKLKLYDKKNNFVCDIED-DEKLL 347
           K K E  + G P T  L L+DK   F   +ED DE+ L
Sbjct: 238 KDKAEAESKGLPYTPPLSLHDKAREFFKRMEDGDEESL 275


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/45 (26%), Positives = 29/45 (64%)
 Frame = -3

Query: 454  SDNRNLSALSEVAKSLTRENLSMTCILIPSSIGYEPRSFSSSSIS 320
            S+N++  ALS + + ++R + ++  +LIP+ I     +F++ ++S
Sbjct: 2035 SENQSEQALSALREIISRRSSTIFPVLIPTLIKKPVSAFNARALS 2079


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
 Frame = -3

Query: 457 SSDNRNLSALSEVAKSLTRENLSMTCILIPSSIGYEPRSFSSSSISHTKLFFLSYNFNFI 278
           S  + +LS+   +  S      S T    PS       +FSS++ + T   +LS + + +
Sbjct: 158 SISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLS-SSSVV 216

Query: 277 VVGDPPVSSSNFVLNSRIL----IPFLNLRSIGAASSLS 173
                P SSS+  L S  L    IP  +  S   +SSLS
Sbjct: 217 SSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLS 255


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 427 SEVAKSLTRENLSMTCILIPSSIGYEPRSFSSSSISH 317
           +E+   +   N  ++ +  P+S+ Y P+ FS+S + H
Sbjct: 4   NEIENFIYLNNTLLSEVPEPNSVFYTPKCFSNSKLPH 40


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -3

Query: 340 FSSSSISHTKLFFLSYNFNFIVVGDPPVSSSNFVLNSRILIPFLNLRSIGAASSLSD 170
           F S S++ +      + F      +PP SSS F+L  + L P  NL S   A+ L +
Sbjct: 243 FISKSLALSYSIKTGFKFQIWKAHNPP-SSSKFILEQKGLPPESNLSSELVAAKLKN 298


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 198 ERRFKKGINILEFKTKLELLTGGSPTTMKLKLYDKKNNFVCD 323
           E    + ++ILE K K+ L   G P   K+    KK  ++ D
Sbjct: 167 ESSHPESVSILEEKKKIPLYPNGQPKYRKILENGKKVKYLLD 208


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 379 ILIPSSIGYEPRSFSSSSISHTKL 308
           +L+ + I  +P  +SSS I HTKL
Sbjct: 143 LLLENDIDQKPIPWSSSPIEHTKL 166


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 451  DNRNLSALSEVAKSLTREN 395
            DN++LS  SE+ +SL +EN
Sbjct: 1476 DNKDLSKFSELIQSLLKEN 1494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,105
Number of Sequences: 5004
Number of extensions: 43143
Number of successful extensions: 144
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)