Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_J11
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 48 2e-06
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 29 0.60
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 29 1.0
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 27 2.4
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.2
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 5.6
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|... 26 5.6
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 5.6
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 26 7.4
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 7.4
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 25 9.7
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 48.0 bits (109), Expect = 2e-06
Identities = 24/67 (35%), Positives = 36/67 (53%)
Frame = +2
Query: 203 CGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERYSGKGFTAK 382
C + ++KPK+++H + R +C+DC F DY +H C+TE +RY KG
Sbjct: 7 CQDIIKKPKLDQH---RSRCHGAYFTCIDCNTTFERTDYRNHTSCMTEAQRYQ-KGLYRP 62
Query: 383 EKKGEKK 403
KK KK
Sbjct: 63 TKKELKK 69
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 29.5 bits (63), Expect = 0.60
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 248 TKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERYSG 364
T K NL D + FL K YE+ IK + EE++ G
Sbjct: 270 TVAHQKISNLPTTDLWSFFLDKRYETRIKKLKEEQKDQG 308
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = +2
Query: 332 KCITEEERYSGKGFTAKEKKGEKKQNAWVEM----LQSVLDEQKSAPQNVRRIIET-ISK 496
K + + E+ K KEK+ +K +AW E +++L Q+ +N+++ E+ SK
Sbjct: 160 KKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRRESKKSK 219
Query: 497 HNNTPRKK 520
P+KK
Sbjct: 220 KGKAPKKK 227
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 431 SVLDEQKSAPQNVRRIIETISKHNNTPRKKPKFINFVKNVC 553
+VL AP +++ + +I + P K PK ++ V+N+C
Sbjct: 268 TVLQFNPIAPTYMKKCLGSILRKEGVP-KSPKLLSLVENIC 307
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 540 SKMSVDIKLIQKTLTKLGNLFL 605
S +S+DI LI KT + LGNL L
Sbjct: 309 SILSIDINLIGKTGSSLGNLIL 330
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 603 EINSQAWSMSFGLVLCPQTFLTKLIN 526
+I +W +F L+LC ++ TKLIN
Sbjct: 100 DITQLSWGYNFDLLLCASSY-TKLIN 124
>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 684
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +3
Query: 99 ILIILKFKVIHFAFKTNSPNSHVFYKKWLFLHAVIVGSLFRSPKWKSIIS 248
+L+ + F + + F T N K WL H++ GS ++ IS
Sbjct: 11 VLLAIVFYIFTYGFSTYRKNDTSAVKTWLEEHSIPYGSRSSPSDFQQFIS 60
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 657 ILPLFTF*VTFDKSVSFTEINSQAWSMSFGLVLCPQTFLTK 535
+L ++ V DK +S ++ + SMSFG + C +TK
Sbjct: 563 LLKIYANNVIIDKRISLKDVALKTNSMSFGELECLPDHMTK 603
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 589 SLVNVFWISFMSTDIFDKINKLRLLSW 509
S++N+FW + + + IF+K L W
Sbjct: 426 SIINIFWSTALKSYIFEKFTNTILGFW 452
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 311 KDYESHIKCITEEERYSGKGFTAKEKK 391
KD + K + + Y GKGFT +K
Sbjct: 259 KDVDESAKALMKARTYPGKGFTLASRK 285
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 30 LTHKSLQKYKTVIHKTTYTSEN 95
L+ L K+KT+I+K T+EN
Sbjct: 609 LSDDELSKWKTIIYKENLTAEN 630
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,054
Number of Sequences: 5004
Number of extensions: 61991
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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