Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_J11
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0484 - 22621614-22621676,22621798-22621911,22622006-226224... 56 3e-08
01_05_0485 - 22628999-22629325,22630340-22630450,22630888-226310... 31 1.1
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 29 4.4
06_03_0815 - 24905641-24905874,24905974-24906044,24906678-249068... 29 5.8
09_02_0053 - 3665202-3665900,3666109-3666359,3666612-3666938,366... 28 7.7
08_02_0911 + 22530370-22530497,22531083-22531126,22531224-225312... 28 7.7
06_03_0083 + 16374830-16374922,16375917-16375974,16377893-163780... 28 7.7
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 28 7.7
>01_05_0484 -
22621614-22621676,22621798-22621911,22622006-22622453,
22623052-22623179,22623747-22623821,22623954-22624040
Length = 304
Score = 56.4 bits (130), Expect = 3e-08
Identities = 26/77 (33%), Positives = 42/77 (54%)
Frame = +2
Query: 179 MVVFTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERY 358
MV F C CG+ ++KPK+ H+ + + LSC+DC + F + + H +CI+E E+Y
Sbjct: 1 MVWFQCEDCGDDLKKPKLAGHFRSCSAYR---LSCIDCGEFFTQETVQGHTQCISEAEKY 57
Query: 359 SGKGFTAKEKKGEKKQN 409
KG + KQ+
Sbjct: 58 GPKGQNKASNNAQGKQD 74
>01_05_0485 -
22628999-22629325,22630340-22630450,22630888-22631034,
22631283-22631337,22631761-22632134,22632926-22633000,
22633419-22633670
Length = 446
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 275 LSCMDCFKDFLGKDYESHIKCITEEERY 358
LSC+DC + F + + H +CI+ E+Y
Sbjct: 85 LSCIDCGESFSQETVQGHAQCISGAEKY 112
>02_05_0672 +
30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 29.1 bits (62), Expect = 4.4
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +3
Query: 390 RVRKNKMLGSRCCSQF*MSKKVHLKMYVG--LLRQ*ASITIH--HERSLSLLILSKMSVD 557
+VR +KM+GS+C +F M+ + L+ LL++ + I + HERSL+ IL M
Sbjct: 326 QVRHDKMVGSKCSIKF-MTDGILLREVQSDFLLKRYSVIILDEAHERSLNTDILIGMLSR 384
Query: 558 IKLIQKTL 581
I I+K+L
Sbjct: 385 IIKIRKSL 392
>06_03_0815 -
24905641-24905874,24905974-24906044,24906678-24906847,
24906862-24906955,24907904-24907948,24908599-24909631
Length = 548
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 129 HFAFKTNSPNSHVFYKKWLFLHAVIVGSLFRSPKWKSIISLNVGIKIQ 272
H+A NS H+ + ++ + A + SLF+ P I + V + Q
Sbjct: 461 HYANFPNSVRKHILFVIFVLMDAEVRNSLFKEPVLHDAIKIGVNFRNQ 508
>09_02_0053 -
3665202-3665900,3666109-3666359,3666612-3666938,
3667017-3667242,3667328-3667846,3668789-3668863,
3668963-3669052,3669142-3669222,3672176-3672222,
3672620-3672685,3673834-3673930,3673983-3674046,
3674160-3674278,3674448-3674563,3676675-3676708
Length = 936
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/70 (21%), Positives = 34/70 (48%)
Frame = +3
Query: 51 KYKTVIHKTTYTSENQILIILKFKVIHFAFKTNSPNSHVFYKKWLFLHAVIVGSLFRSPK 230
++K + K + + Q+ I++ V+H N P++ ++ + ++H + +G + K
Sbjct: 575 RFKVLASKPFFPYKVQVKIVIACCVLHNWILDNGPDNIIYDEARWYIHNMDIGGSNKHGK 634
Query: 231 WKSIISLNVG 260
KS VG
Sbjct: 635 GKSKARKGVG 644
>08_02_0911 +
22530370-22530497,22531083-22531126,22531224-22531267,
22531428-22531946,22532032-22532257,22532336-22532662,
22532915-22533165,22533374-22534072
Length = 745
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/70 (21%), Positives = 34/70 (48%)
Frame = +3
Query: 51 KYKTVIHKTTYTSENQILIILKFKVIHFAFKTNSPNSHVFYKKWLFLHAVIVGSLFRSPK 230
++K + K + + Q+ I++ V+H N P++ ++ + ++H + +G + K
Sbjct: 384 RFKVLASKPFFPYKVQVKIVIACCVLHNWILDNGPDNIIYDEARWYIHNMDIGGSNKHGK 443
Query: 231 WKSIISLNVG 260
KS VG
Sbjct: 444 GKSKARKGVG 453
>06_03_0083 +
16374830-16374922,16375917-16375974,16377893-16378089,
16378176-16378292,16378437-16378497,16378603-16378691,
16378808-16378882,16378992-16379080,16379203-16379252,
16379539-16379699,16380004-16380132,16380548-16380928
Length = 499
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Frame = +3
Query: 138 FKTNSPNSHVFYKKWLFLHAVI-VGSLFRSPKWKSIISLNVGIKIQICHVWTVSKIF*EK 314
F N P+ +F+ HA + F W SI+ + VGI +Q+ + ++
Sbjct: 312 FWFNRPDWVLFFIHLTLFHATPGLKKCFHENIWLSIVEVIVGISLQVLCSYITFPLY--A 369
Query: 315 IMNRISSALLK---KKDTLEKVSQLRRKRVRKNKM 410
++ ++ S + K ++ T++ + R+K + K K+
Sbjct: 370 LVTQMGSNMKKTIFEEQTMKALMNWRKKAMEKKKV 404
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/87 (18%), Positives = 39/87 (44%)
Frame = +2
Query: 185 VFTCSHCGESVQKPKVEKHYLTKCRNKNPNLSCMDCFKDFLGKDYESHIKCITEEERYSG 364
V+ H ES +K K ++ + K DC ++L ++ +H+K +++
Sbjct: 461 VYLMRHKSESFEKFKKFQNEVQNHLGKTTKYLRSDCGGEYLSLEFGNHLKKCGIAPQFTP 520
Query: 365 KGFTAKEKKGEKKQNAWVEMLQSVLDE 445
G E++ ++M++S++ +
Sbjct: 521 PGTPQWNGVSERRNRTLLDMVRSMMSQ 547
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,271,348
Number of Sequences: 37544
Number of extensions: 330740
Number of successful extensions: 946
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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