Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_J09
(379 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 27 0.74
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 26 2.3
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 25 3.9
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 5.2
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 6.9
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 24 6.9
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 6.9
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 0.74
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 306 IVNNVSSIVLLVRVFKELLKKCNAASNTSPLRVNER 199
IV NV ++ + ++ E+LKK + N +PL + R
Sbjct: 308 IVENVKAVEFIDKLTPEILKKIDEILNFTPLEIQYR 343
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.8 bits (54), Expect = 2.3
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = -3
Query: 371 PPPPXARCGTRRTPPLPIHTVL--LSIMYPQ*F 279
PP C R TP PIH V+ S +PQ F
Sbjct: 174 PPKTYPVCTIRSTPSQPIHCVVWAKSYFFPQLF 206
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 25.0 bits (52), Expect = 3.9
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = +2
Query: 182 YNADTQRSLTRNGEVLLAALHFFNNSLNTLTNKTIEDTLLTIRQYESARVEY 337
Y R L +NGE + ++ N+S + + + +T R Y+++ ++Y
Sbjct: 9 YFGKLSRYLYKNGEPINIWVYSRNSSFSVIPKNGLLSPKITQRFYQNSSIQY 60
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 24.6 bits (51), Expect = 5.2
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -3
Query: 377 HRPPPPXARCGTRRTPPLPIH 315
H PPPP PP P+H
Sbjct: 206 HMPPPPMHHKPGEHMPPPPMH 226
Score = 24.2 bits (50), Expect = 6.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -3
Query: 377 HRPPPPXARCGTRRTPPLPIH 315
H PPPP PP P+H
Sbjct: 219 HMPPPPMHHEPGEHMPPPPMH 239
Score = 24.2 bits (50), Expect = 6.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -3
Query: 377 HRPPPPXARCGTRRTPPLPIH 315
H PPPP PP P+H
Sbjct: 232 HMPPPPMHHEPGEHMPPPPMH 252
Score = 24.2 bits (50), Expect = 6.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -3
Query: 377 HRPPPPXARCGTRRTPPLPIH 315
H PPPP PP P+H
Sbjct: 245 HMPPPPMHHEPGEHMPPPPMH 265
Score = 24.2 bits (50), Expect = 6.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -3
Query: 377 HRPPPPXARCGTRRTPPLPIH 315
H PPPP PP P+H
Sbjct: 258 HMPPPPMHHEPGEHMPPPPMH 278
Score = 24.2 bits (50), Expect = 6.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -3
Query: 377 HRPPPPXARCGTRRTPPLPIH 315
H PPPP PP P+H
Sbjct: 271 HMPPPPMHHEPGEHMPPPPMH 291
Score = 24.2 bits (50), Expect = 6.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -3
Query: 377 HRPPPPXARCGTRRTPPLPIH 315
H PPPP PP P+H
Sbjct: 284 HMPPPPMHHEPGEHMPPPPMH 304
Score = 24.2 bits (50), Expect = 6.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -3
Query: 377 HRPPPPXARCGTRRTPPLPIH 315
H PPPP PP P+H
Sbjct: 297 HMPPPPMHHEPGEHMPPPPMH 317
Score = 24.2 bits (50), Expect = 6.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -3
Query: 377 HRPPPPXARCGTRRTPPLPIH 315
H PPPP PP P+H
Sbjct: 310 HMPPPPMHHEPGEHMPPPPMH 330
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 24.2 bits (50), Expect = 6.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 140 DLAQKSPELQNQFLYNADTQRSLTRNGEVLLAALHFFNN 256
DL ++ +L+N+ L + ++SL L A FNN
Sbjct: 232 DLKKREKDLENRLLKVEEHEKSLNERATKLSEANENFNN 270
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 24.2 bits (50), Expect = 6.9
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Frame = -3
Query: 377 HRPP-PPXARCGTRRTPPLPIHTV 309
H PP PP + G P P HTV
Sbjct: 104 HEPPIPPLHKTGVFSVPLQPTHTV 127
>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 24.2 bits (50), Expect = 6.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 206 LTRNGEVLLAALHFFNNSLNTLTNKTIEDTLLTIRQY 316
L +N VLLAA +F N + + L I L ++++
Sbjct: 157 LFKNSLVLLAACYFMNTTPSRLVINLIRSGYLILKRF 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,468,007
Number of Sequences: 5004
Number of extensions: 25658
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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