Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_J09
(379 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0617 - 4483517-4483978,4484093-4484490,4484814-4484898,448... 28 2.1
05_06_0124 - 25822176-25822633,25822738-25825420 28 2.8
03_02_0569 - 9528027-9529256,9530019-9530260,9530374-9531161,953... 27 3.7
07_03_1750 - 29207692-29208225 27 4.9
07_03_0724 + 20975942-20976867,20977397-20977476,20977976-209783... 27 4.9
03_01_0576 + 4255153-4255238,4256051-4256153,4256235-4256556,425... 27 4.9
01_01_0046 - 331758-332627 27 4.9
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 26 8.6
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453... 26 8.6
01_06_0728 + 31544005-31544856,31545439-31545597,31545705-31546028 26 8.6
>06_01_0617 -
4483517-4483978,4484093-4484490,4484814-4484898,
4485002-4485838
Length = 593
Score = 28.3 bits (60), Expect = 2.1
Identities = 9/36 (25%), Positives = 26/36 (72%)
Frame = -2
Query: 309 LIVNNVSSIVLLVRVFKELLKKCNAASNTSPLRVNE 202
+IV +VS+++LL+ + + ++ +C+ +NT+ +++
Sbjct: 491 VIVGSVSTLMLLISIVRLVVSRCSETANTNAPSIDD 526
>05_06_0124 - 25822176-25822633,25822738-25825420
Length = 1046
Score = 27.9 bits (59), Expect = 2.8
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +2
Query: 158 PELQNQFLYNADTQRSLTRNGEVLLAALHFFNNSLNTLTNKTIEDTLLTIRQYESARVEY 337
P+LQ FLY + NG++ A+L + + S N LT TI ++ ++ + +
Sbjct: 270 PKLQYLFLYTNQLTGDVVVNGKIGAASLIYLDISENQLTG-TIPESFGSLMNLTNLALMT 328
Query: 338 DAYRSELXAA 367
+ + E+ A+
Sbjct: 329 NNFSGEIPAS 338
>03_02_0569 -
9528027-9529256,9530019-9530260,9530374-9531161,
9531613-9531953,9532090-9532310,9532392-9532702,
9532779-9533038,9533691-9533891,9533992-9534167,
9534242-9534296,9535739-9536146
Length = 1410
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 215 NGEVLLAALHFFNNSLNTLTNKTIEDTL 298
+G L+ LH+F SLN L ++ +E L
Sbjct: 96 HGAALVIYLHYFGRSLNLLDSERVESAL 123
>07_03_1750 - 29207692-29208225
Length = 177
Score = 27.1 bits (57), Expect = 4.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 371 PPPPXARCGTRRTPPLPIHTVLLSIMYP 288
PPPP AR R PPL +L + P
Sbjct: 101 PPPPAARPAPRSRPPLASKAKVLGRLVP 128
>07_03_0724 +
20975942-20976867,20977397-20977476,20977976-20978370,
20988410-20989444
Length = 811
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +2
Query: 158 PELQNQFLYNADTQRSLTRNGEVLLAALHFFNNSLNTLTNKTIEDTLLTIRQYESARVEY 337
P+LQ FLY + NG++ A+L + + S N LT TI ++ ++ + +
Sbjct: 353 PKLQYLFLYTNQLTGDVVVNGKIGAASLIYLDISENQLTG-TIPESFGSLMNLTNLVLMA 411
Query: 338 DAYRSELXAA 367
+ + E+ A+
Sbjct: 412 NNFSGEIRAS 421
>03_01_0576 +
4255153-4255238,4256051-4256153,4256235-4256556,
4257451-4257823,4257857-4258103,4258189-4258248,
4258767-4258836,4259299-4259357,4259855-4259944
Length = 469
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = -2
Query: 180 RNWFCSSGDFCXXXXXXXXXXXXXSKARASCPARDELKRRTALYLRCVYTDHLNLGLQ 7
R + CS F + R CPAR +K + +Y R V+T + LQ
Sbjct: 129 RTFVCSREGFRKDKKGAKEVKRPRPETRIGCPARMSIKITSDVYNRHVFTADIKSSLQ 186
>01_01_0046 - 331758-332627
Length = 289
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 374 RPPPPXARCGTRRTPPLPIHTVLL 303
+PPPP +R G PP P V++
Sbjct: 71 QPPPPASRDGRHEPPPKPKDVVVI 94
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 322 GKGGVRRVPQRAXGGGG 372
G G RRVP R GGGG
Sbjct: 875 GAGMARRVPTRPRGGGG 891
>02_04_0005 -
18843061-18843201,18843309-18843440,18844457-18845315,
18845884-18845973,18846748-18846869,18846950-18847049,
18847151-18847205,18847275-18847365,18847453-18847572,
18847681-18847780,18847890-18848018,18848099-18848201,
18848670-18848743,18848848-18848933,18849297-18849358,
18849454-18849541,18849937-18850029
Length = 814
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -3
Query: 371 PPPPXARCGTRRTPPLPIHTVL-LSIMYPQ 285
PPPP CG PP V+ S MYP+
Sbjct: 689 PPPPSPACGVYYPPPTVREPVINRSGMYPK 718
>01_06_0728 + 31544005-31544856,31545439-31545597,31545705-31546028
Length = 444
Score = 26.2 bits (55), Expect = 8.6
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 54 VQFYV*AHLWQGSLLSPLTLNVRWVKHLLTSHRNHRNCRTNFSTMRILNV 203
+QF + L G+ L+ LTL +K L + +++ N F +RIL+V
Sbjct: 259 LQFRIRPFLDAGTGLTCLTLRGMAIKLLSSEYKDTPNLAVQFEDLRILSV 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,630,843
Number of Sequences: 37544
Number of extensions: 200620
Number of successful extensions: 790
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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