Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_J09
(379 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 25 0.22
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 1.2
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 22 2.1
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 22 2.1
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 22 2.1
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 3.6
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 3.6
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 3.6
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 21 4.8
AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein. 21 6.4
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 20 8.4
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 20 8.4
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 25.4 bits (53), Expect = 0.22
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +2
Query: 116 RALGEAFADLAQKSPELQNQFLYNADTQRSLTRNGEVLLAALHF-FNNS--LNTLTNKTI 286
++L EAFA L + P L + L T + TR + L LH N+ + + +
Sbjct: 267 QSLNEAFAALRKIIPTLPSDKLSKIQTLKLATRYIDFLFQVLHCNMENTEGADDASERNP 326
Query: 287 EDTLLTIRQYESARVEYDAY 346
+L R+ S+ Y A+
Sbjct: 327 RSAVLAAREITSSSCSYMAH 346
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.0 bits (47), Expect = 1.2
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -3
Query: 320 IHTVLLSIMYPQ*FYW*ECSRNY*RNVMQPAILHHCGSM 204
+H I P + NY +M AILHH G +
Sbjct: 95 LHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKV 133
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 22.2 bits (45), Expect = 2.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 182 REIGSAVPVISVRGQQMLHPAH 117
RE G+ VP+ + QM+H H
Sbjct: 309 RETGATVPLHMQKYVQMIHDLH 330
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 22.2 bits (45), Expect = 2.1
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 161 ELQNQFLYNADTQRSLTRNGEVLLAALHFFNNSLNTLTNKTIEDT-LLTIRQYESARVEY 337
ELQN R L NG + + + N LN L +ED + ++ +E R+ +
Sbjct: 808 ELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFERLSH 867
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 22.2 bits (45), Expect = 2.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 182 REIGSAVPVISVRGQQMLHPAH 117
RE G+ VP+ + QM+H H
Sbjct: 309 RETGATVPLHMQKYVQMIHDLH 330
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.4 bits (43), Expect = 3.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 358 QLAAVRVVLHPCRFILSYCQ*CIL 287
Q AA V+HPC Y C+L
Sbjct: 73 QKAAGHWVIHPCSSFRFYWDLCML 96
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.4 bits (43), Expect = 3.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 358 QLAAVRVVLHPCRFILSYCQ*CIL 287
Q AA V+HPC Y C+L
Sbjct: 73 QKAAGHWVIHPCSSFRFYWDLCML 96
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.4 bits (43), Expect = 3.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 358 QLAAVRVVLHPCRFILSYCQ*CIL 287
Q AA V+HPC Y C+L
Sbjct: 73 QKAAGHWVIHPCSSFRFYWDLCML 96
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 21.0 bits (42), Expect = 4.8
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 215 NGEVLLAALHFF 250
NGE+ LA L+FF
Sbjct: 34 NGELFLALLNFF 45
>AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein.
Length = 147
Score = 20.6 bits (41), Expect = 6.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 344 TRRTPPLPIHTVLLS 300
TR+ PPL HT +++
Sbjct: 98 TRKLPPLHPHTAMVT 112
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 20.2 bits (40), Expect = 8.4
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -3
Query: 332 PPLPIHT 312
PPLP+HT
Sbjct: 442 PPLPLHT 448
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 20.2 bits (40), Expect = 8.4
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -3
Query: 332 PPLPIHT 312
PPLP+HT
Sbjct: 442 PPLPLHT 448
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,222
Number of Sequences: 438
Number of extensions: 1966
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 9176370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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