Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_J07
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...   149   4e-37
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.6  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    27   3.4  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   7.9  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score =  149 bits (361), Expect = 4e-37
 Identities = 72/163 (44%), Positives = 100/163 (61%), Gaps = 5/163 (3%)
 Frame = +2

Query: 173 RFLLEGQIIELI*TIIPAFTLIFIALPSLRLXYLLDELNNPLITLKSIGHQ*Y*RYEYSD 352
           ++   G I+E I T+IPA  LI +ALPS +L YLLDE+  P +T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 353 F-----NNIEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPS 517
           F       + FDSY++P  +++    R L+VD               T+ DVIHS  +PS
Sbjct: 129 FVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPS 188

Query: 518 LGVKVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIV 646
           LG+K D  P RLNQ +  I+R G+F+GQCSE+CG  HS +PIV
Sbjct: 189 LGIKCDCIPSRLNQVSLSIDREGLFYGQCSELCGVLHSSMPIV 231


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +2

Query: 236 IFIALPS--LRLXYLLDELNNPLITLKSIGHQ*Y*RYEYSDFNNIEFDSYIIPSNEIKNN 409
           +F +LP   LRL +LL   +N  +T +S+ H+   R     F  I+F   ++P + I + 
Sbjct: 36  VFESLPLEVLRLIFLLSNNSNLAVTSRSLRHRLSLRNNTPIFMPIDFTLSMVPKSIILSI 95

Query: 410 EFRLL 424
           +  LL
Sbjct: 96  QRGLL 100


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +2

Query: 248 LPSLRLXYLLDELNN-PLITLKS 313
           LPS+RL Y+LD L   PL+ +K+
Sbjct: 430 LPSVRLSYILDTLEECPLLNIKT 452


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 459 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 346
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,528
Number of Sequences: 5004
Number of extensions: 34878
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)