Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_J04
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar... 50 2e-07
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo... 30 0.23
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 30 0.30
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 2.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 26 4.9
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 25 6.4
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 8.5
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||... 25 8.5
>SPAC630.11 |vps55||vacuolar sorting protein Vps55
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 122
Score = 50.4 bits (115), Expect = 2e-07
Identities = 30/130 (23%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Frame = +2
Query: 152 MAGIKGLVSLAFAGSIGMTFVILACALPQYKLWWPFFVVLFYILCPIPTMIARRHT---D 322
M+ ++ ++ L+ ++G VIL+CAL +K W+P ++ P+P ++ ++++ D
Sbjct: 1 MSDLRKIIGLSSVLAVGFMLVILSCAL--FKNWYPL------LIAPLPNLLTKKYSTSHD 52
Query: 323 GAGGSNSACMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGFF 502
+ ++ F + + FALPIV G+I A ++ G I++L I +
Sbjct: 53 FLQEEDRNLLDFGRFTFGATICTGFALPIVFVNVGLIGTAAATMSCVGGSIIFLVITLYS 112
Query: 503 TIFDMDDSDY 532
F + ++
Sbjct: 113 QAFVQHEEEF 122
>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
Stt3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 752
Score = 30.3 bits (65), Expect = 0.23
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 368 ITMGFLVSSFALPIVLARAGVIFWGAC 448
I + L+S+FAL I ++G FWGAC
Sbjct: 177 IAITLLMSTFALWIKAVKSGSSFWGAC 203
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 29.9 bits (64), Expect = 0.30
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Frame = +2
Query: 266 VLFYILCPIPTMIARRHTDGAGGSNSACM--ETAVFITMGFLVSSFALPIVLARAGVIFW 439
+L YI+CP+ T+++ + S + + V + + F +S +P V +F+
Sbjct: 21 ILLYIVCPLETIVSILYWSIVSYDRSLLIPKDRPVPLPLNFDISVHLMPTVYTLIDYLFF 80
Query: 440 GACY-LTLAGNVIVYLTI 490
+ L++ +++VYL+I
Sbjct: 81 SPPFSLSIGPSLLVYLSI 98
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -2
Query: 535 RIIGVVHVKDGEETQDRQIYDHVTGQCKVTCTP 437
R++ +++ +DG E+ + +Y H+ KV+ TP
Sbjct: 680 RVMDILY-RDGPESFSKLLYSHIEPMLKVSITP 711
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -2
Query: 568 SFQKIXDFSPHRIIGVVHVKDGEETQDRQIYDHVTGQCKVTCTPKNHTSPGEN 410
SF +F P ++I VV DG+ Y G K+ PK+ T P E+
Sbjct: 17 SFSDDLEFDPGQVIDVVSNLDGDWYTG--TYVDSDGNRKIGSFPKDFTEPAED 67
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 52 KTKQIIYYLLAEVYFISGVFKQEENNY 132
KT +YY A+V F+SG F + ++Y
Sbjct: 412 KTDSDLYYHRAQVRFVSGEFAEAISDY 438
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 6.4
Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
Frame = +1
Query: 163 KRFGVVGIRGFNWNDI---CHTSLCLTTIQTMVAILRCAILHSVP--NTYDDR*EAY*WC 327
KR G RGF ++ C + ++ IL C + H P DD
Sbjct: 257 KRADRAGTRGFRAPEVLFRCQNQTSSIDVWSVGVILLCFLTHRYPFFRCEDDIDAIVELA 316
Query: 328 WRFKFRLYGNCSIYHNGIFSQLFCATDSSRQGWCDFL 438
F NC++ H I+S + W D +
Sbjct: 317 HIFGRNGMSNCALLHGQIWSDNIPTLLDQKHNWLDLI 353
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 251 WPFFVVLFYILC-PIPTMIARRHTDGAGGSNSACMETAVFI 370
+PF+ VLFY C P+ A H +S+CM+ ++
Sbjct: 523 YPFYEVLFYDYCRPLNQAFASGHQRSV--IHSSCMDPEYYV 561
>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 76 LLAEVYFISGVFKQEENNYT*NIKHNGWNKRFG 174
++A F+S K E N++ + W +RFG
Sbjct: 166 MMAAAKFLSQYIKDESNSFVISSDFCHWGRRFG 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,845
Number of Sequences: 5004
Number of extensions: 51725
Number of successful extensions: 97
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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