Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_J04
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1124 - 34279570-34279765,34280074-34280158,34280236-342802...    65   4e-11
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164...    50   1e-06
04_04_0670 - 27128153-27129075,27129152-27129266,27129348-271295...    33   0.17 
01_01_0778 + 6024154-6024315,6024725-6024802,6024909-6025071,602...    32   0.30 
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137...    28   5.0  
07_01_0239 + 1744353-1746365                                           28   6.5  
11_08_0008 + 27591454-27592154,27595078-27595253,27595774-275959...    27   8.7  

>02_05_1124 -
           34279570-34279765,34280074-34280158,34280236-34280275,
           34280371-34280460
          Length = 136

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
 Frame = +2

Query: 170 LVSLAFAGSIGMTFVILACALPQYKLWWPFFVVLFYILCPIPTMIARRHTDGAGGSNSA- 346
           L  LA   S G+   ILACAL  Y  WWP   VL Y++ P+P +        +  SN   
Sbjct: 14  LALLAILVSGGIVLQILACAL--YNNWWPMLTVLMYLILPMPLIFFLGSNSPSMMSNDGD 71

Query: 347 -CMETAVFITMGFLVSSFALPIVLARAGVIFWGACYLTLAGNVIVYLTILGFFTIFDMDD 523
             +    F+T   +V S A+P +L  AGVI WGA  + L+  ++  + IL    +   D+
Sbjct: 72  TWVSFTKFLTGASIVGSIAIPSILKHAGVIGWGALTMELSSFLVFGVAILWLIQMNSEDE 131


>01_07_0303 +
           42615578-42615709,42616273-42616312,42616393-42616477,
           42616634-42616813,42618274-42618354,42618890-42619011,
           42619867-42620723,42621656-42621897,42622107-42622200,
           42622306-42622476,42622695-42622740,42624101-42624111,
           42624141-42624392
          Length = 770

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
 Frame = +2

Query: 221 ACALPQYKLWWPFFVVLFYILCPIPTMIARRHTDG--AGGSNSACMETAVFITMGFLVSS 394
           ACAL  Y  WWP    L Y+L P+P +     +               A F+T    + S
Sbjct: 45  ACAL--YNNWWPMLAALMYVLVPMPCLFFGGGSTQFLTSRDGGGWFNAAKFLTGASAMGS 102

Query: 395 FALPIVLARAGVIFWGACYLTLAGNVIVYLTILGF 499
            A+P +L  AG+I  GA ++      I+  T++ F
Sbjct: 103 IAIPAILRHAGLIETGAMFIEFTSFFILVCTVMCF 137


>04_04_0670 -
           27128153-27129075,27129152-27129266,27129348-27129537,
           27129652-27129786,27129874-27129971,27131075-27131764
          Length = 716

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 14/38 (36%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +2

Query: 179 LAFAGSIGMTFV-ILACALPQYKLWWPFFVVLFYILCP 289
           LAF+G +G+TF+ ++A  +  +++ W ++VV+ Y+L P
Sbjct: 434 LAFSGYLGLTFIAVIAIPMMFHEMKW-YYVVIAYLLAP 470


>01_01_0778 +
           6024154-6024315,6024725-6024802,6024909-6025071,
           6025484-6025788,6025897-6025961,6026570-6026763,
           6027233-6027441,6028147-6028325,6029345-6029459,
           6029520-6029558
          Length = 502

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 233 PQYKLWWPFFVVLFYILCPIPTMIARRHTDGAGGSNSACMETAVFITMGFL 385
           P Y+   P    LF++  PI   +ARR    + G N A + T +F  +GFL
Sbjct: 165 PFYRKPTPAMGGLFFV--PIGIFVARRQVGSSTGVNGAAIITLIFAMVGFL 213


>02_04_0490 -
           23411742-23412944,23413071-23413595,23413666-23413747,
           23413841-23414050,23414371-23414523,23415335-23415447,
           23415476-23415622
          Length = 810

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 413 LARAGVIFWGACYLTLAGNVIVYLTILGFFTIFDMDDSDYAMW*EIXNLLK 565
           L R G   W + Y TL   V ++ TI+    I + D +D+ +  +  NLL+
Sbjct: 475 LQRPGDTRWSSHYKTLKSLVGMFATIVKVLEIVEKDKNDWKIRDQASNLLE 525


>07_01_0239 + 1744353-1746365
          Length = 670

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 541 PHRIIGVVHVKDGEETQDRQIYDHVTGQCKVTCTPKNHTSP 419
           P+ I+  + +K GEE Q    YDH   Q  VT  P     P
Sbjct: 161 PYSILHPLRLKSGEEMQVWIDYDHRRMQLNVTLAPVPMAKP 201


>11_08_0008 +
           27591454-27592154,27595078-27595253,27595774-27595968,
           27598124-27599184
          Length = 710

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 547 FSPHR-IIGVVHVKD-GEETQDRQIYDHVTGQCKVTCTPKNHTS 422
           FSP R   G + +KD   E  + ++Y HV  QC  +   + H S
Sbjct: 86  FSPPRPYTGTIEIKDISLEAGEMRVYTHVAHQCYDSSHHEEHVS 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,985,891
Number of Sequences: 37544
Number of extensions: 334013
Number of successful extensions: 768
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)