Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_J02
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.6  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   2.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.0  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   8.7  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   8.7  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   8.7  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 126 RLQCQQCRI-KIISVHQQLRLNLQSIQC 206
           R +CQ+CR+ K +SV  +    +  +QC
Sbjct: 237 RRKCQECRLKKCLSVGMRPECVVPEVQC 264


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 501 GNFKTSLSSILFGVSHSVMSSEAPSDLLATLLSPCGS 391
           G F   L+ +   VS  +   +A SDL+   LS C S
Sbjct: 218 GKFTVPLTPV---VSEPIYDKKAMSDLMIVKLSHCNS 251


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 131 PMSTMPNKDNIRTPTTEVKPSIN 199
           P  T      ++TPTT + P+IN
Sbjct: 300 PGPTYSTWSTVQTPTTVMSPTIN 322


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 374 IKKLKLEPQGDKRVAKRSE 430
           I   +LEP+GD R   R E
Sbjct: 832 INNKRLEPKGDNRYTIREE 850


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/58 (20%), Positives = 27/58 (46%)
 Frame = +2

Query: 377 KKLKLEPQGDKRVAKRSEGASDDITECETPNKMDDKDVLKFPTVKQRMPKALWSTDEK 550
           K+L  +   +++  +  E    D  + E   + +D+D  K    K++  K  ++ DE+
Sbjct: 221 KELSDDEAEEEKKEEEGEDKDKDKPKIEDVGEDEDEDTKKEDKKKKKTIKEKYTEDEE 278


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 149 NKDNIRTPTTEVKPSINPVLQVVTAKSTMVPI 244
           +K+N  T   E+K +  P   ++T   + +PI
Sbjct: 152 DKENFITLLREIKEAFQPKGHLLTIAVSAIPI 183


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 417 ATLLSPCGSSFSFL 376
           A L + CGS+FS+L
Sbjct: 352 ALLFAICGSAFSYL 365


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,476
Number of Sequences: 336
Number of extensions: 2708
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)