Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_J02
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.9  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   7.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.8  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 280 HGCLFHRLRYNFDWYHCTFSC 218
           HG L++  R + DW+  +  C
Sbjct: 12  HGGLYYHQRCSRDWFRISAGC 32


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 295 HRRRRHGCLFHRLRYNFDWYHCTF 224
           H+R+    L H ++  ++W H  F
Sbjct: 25  HQRKSANNLAHSMKVIYEWKHIDF 48


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 608 TP*SHRNPSRTHSGPRRIDSFRP-WTTEPWACAV*PSGTSKRPYRPF 471
           TP  H+  +  +  P   D+  P W T  W        TSK+P R F
Sbjct: 399 TPVFHQEMALYYLKPS-YDAQEPAWKTHVWKKGRDKKSTSKKPRRKF 444


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 472 FVWSFTFCYVIGSA 431
           F+W FT   V+G+A
Sbjct: 517 FLWIFTLAVVVGTA 530


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 111 LLPLKRLQCQQCRIK 155
           +L + R +CQ CR+K
Sbjct: 63  ILRINRNRCQYCRLK 77


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 111 LLPLKRLQCQQCRIK 155
           +L + R +CQ CR+K
Sbjct: 112 ILRINRNRCQYCRLK 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,622
Number of Sequences: 438
Number of extensions: 3365
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)