Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I23
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    29   0.52 
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   4.9  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    26   6.4  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    26   6.4  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    26   6.4  

>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 247 NRQQSSSPGVRN--RFPSTSSTDENESGTDGEADRSRRQTILHGVSGMQPQGQIVTI 411
           N  + S P V++  + P  + + +NESG     D    ++    V   QPQ +I T+
Sbjct: 588 NASEESYPNVKHISKLPLINDSSDNESGNQENDDAVANESTKVVVDNQQPQPKISTV 644


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 181 PFRSGRAVLVRDRPWEVT*LITQSMQ 104
           PF+S    +++D PW +T  + Q++Q
Sbjct: 466 PFKSNIFYVLKDVPWSITKYLPQALQ 491


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = +1

Query: 259 SSSPGVRNRFPSTSSTDENESGTDGEADRSRRQTILHGVSGMQPQ 393
           SS P V  + PS++   +  +G+D + +  +R  ++  +  + P+
Sbjct: 297 SSPPSVPQKIPSSNHKSQQANGSD-QGNEGKRMALIQQLLALTPE 340


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +1

Query: 190 HRRDVRELTREIIRDARVANRQQSSSPGVRNRFPSTSSTDENES 321
           H R + E   + + D+  A R QSS  G  N   STSST    S
Sbjct: 442 HERSLLEQLADALNDS-TARRTQSSPSGT-NSSTSTSSTSSKHS 483


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 148 LSQEQRDRTEMAFQHRRDVRELTREIIRDARVANRQQ-SSSPGVRNRFPSTSSTDENESG 324
           L+ +  D  E+  Q  R V+E   +  + ++  N ++  +S  V N   +  S+DENE+ 
Sbjct: 109 LNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPETSTSVENAESAKGSSDENEAN 168

Query: 325 T 327
           T
Sbjct: 169 T 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,106
Number of Sequences: 5004
Number of extensions: 60183
Number of successful extensions: 178
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)