Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I23
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    26   0.42 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.42 
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    25   0.74 
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    25   0.98 
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    25   0.98 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.98 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   4.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.2  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   6.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.1  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 442 SVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRI 585
           S + L R   +   N Y ++  +  LS++  L+  Q+  WF N R +I
Sbjct: 28  SAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIKIWFQNKRAKI 75


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +1

Query: 403 VTIRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVC---NWFINA 573
           +TI  +R +  KH  ++    L    Y  Y +    I +   AN+   ++C    W  +A
Sbjct: 170 ITIFPQRTD-GKHDYRVWNHQLIS--YAGYKNPDGTI-IGDPANIEFTELCMKLGWK-SA 224

Query: 574 RRR--ILPEMIRREGHDPLHYTI 636
           R R  ILP ++   GHDP ++ I
Sbjct: 225 RTRFDILPLILSANGHDPDYFDI 247


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 484 NAYPSDAEKIALSQEANLSVLQVCNWFINARRRI 585
           N Y ++  +  LS++  L+  Q+  WF N R +I
Sbjct: 42  NRYLTERRRQQLSRDLGLNEAQIKIWFQNKRAKI 75


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 472 DHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILPEM 597
           +  YN Y +   +I ++    L+  Q+  WF N R ++  E+
Sbjct: 26  EFHYNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 67


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 472 DHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRRILPEMIRREG 612
           +  YN Y +   +I ++    L+  Q+  WF N R +   E  R  G
Sbjct: 26  EFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENARATG 72


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -1

Query: 660 WLFPSAA*DRV---V*RIMTLATYHLRQDATSRVYKPVTYLQ 544
           W+ P AA  RV   V  ++TL+T H +  A+     PV+YL+
Sbjct: 267 WIKPEAAPARVTLGVTSLLTLSTQHAKSQAS---LPPVSYLK 305


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 472 DHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 582
           +  YN Y +   +I ++    L+  Q+  WF N R +
Sbjct: 288 EFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 324


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +2

Query: 47  YVLKKSNSCAQWSRTKTKCLHGLSDQLCYLPRPV 148
           + L   N C +WS  K++    +   L   PR +
Sbjct: 359 FKLMLPNCCGKWSSQKSEPRRSIYSSLLRYPRSI 392


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 316 ESGTDGEADRSRRQTILHGVSGMQPQ 393
           E G+ G    S    +LHG+    PQ
Sbjct: 175 EPGSTGTTTTSTGTRLLHGILSQHPQ 200


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/58 (18%), Positives = 29/58 (50%)
 Frame = +1

Query: 409 IRKRRGNLAKHSVKILKRWLYDHRYNAYPSDAEKIALSQEANLSVLQVCNWFINARRR 582
           ++++R +  ++    L++   +  +N Y +   +I ++    L+  Q+  WF N R +
Sbjct: 8   VKRQRTSYTRYQTLELEK---EFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 62


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 393 LGLHAGDSVEDGLPARP 343
           LG+ A DS E+ L ARP
Sbjct: 36  LGIWADDSDEEELSARP 52


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -1

Query: 660 WLFPSAA*DRVV*RIMTLATYHLRQDATSRVYKPVTYLQDTQIGLLAERYFL 505
           WL   A+  R+V    T+ T+             V+Y++ ++I  L    FL
Sbjct: 254 WLHMDASPPRIVLGTNTILTFMTLASKVENSLPKVSYIKASEIWFLGCTIFL 305


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 16  C*DTVLSNVILCTEKI*QLCSV 81
           C   V  +++LCT  I  LC++
Sbjct: 111 CDSWVSLDILLCTASILSLCAI 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,737
Number of Sequences: 438
Number of extensions: 4348
Number of successful extensions: 21
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)