Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_I22
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 30 0.45
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.79
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 5.6
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 5.6
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 5.6
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 5.6
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 5.6
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 5.6
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 5.6
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 5.6
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 5.6
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 5.6
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 5.6
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch... 26 7.4
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 25 9.7
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 9.7
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 9.7
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 9.7
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 29.9 bits (64), Expect = 0.45
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 616 EVYGSLDNVVIITLAPELPGCFEAIKDLTNLGIKVALGHSIASLAEGEKAVECGANLITH 795
E GS+D V I + + F ++D+T V G + L + E+A++ G N++
Sbjct: 342 EEMGSVDVVETIEIGGDRVTVFRQVEDITRTATIVLRGATKTYLDDLERAIDDGVNIVKA 401
Query: 796 L 798
L
Sbjct: 402 L 402
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 29.1 bits (62), Expect = 0.79
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 100 QLYLFKMKSKSGLTRFHNCYILRDR--KIIKEDLWIRDGK 213
QLY + + S ++ F NCY++ D II+ D I +G+
Sbjct: 11 QLYNYSVYSNGTISNFTNCYLINDEHTPIIESDGMIYNGQ 50
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +1
Query: 424 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 591
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 592 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 702
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +1
Query: 424 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 591
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 592 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 702
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +1
Query: 424 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 591
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 592 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 702
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +1
Query: 424 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 591
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 592 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 702
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +1
Query: 424 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 591
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 592 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 702
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +1
Query: 424 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 591
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 592 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 702
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +1
Query: 424 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 591
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 592 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 702
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +1
Query: 424 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 591
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 592 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 702
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +1
Query: 424 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 591
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 592 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 702
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +1
Query: 424 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 591
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 592 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 702
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +1
Query: 424 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 591
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 592 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 702
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
Cka1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 535 PFISPTKKGAHVESYIKNPHRGIDTIREVYGSLDNVVII 651
P +S ++ AHV + + + ++EV+G DN II
Sbjct: 8 PVVSVSRVYAHVNEEMPREYWDYENMQEVFGYQDNYEII 46
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 25.4 bits (53), Expect = 9.7
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 127 KSGLTRFHNCYILRDRKIIKEDLWIR--DGK--IENPERVFYVEQLEADITVDCEDLLIA 294
KSG +L +KI E W+ +G ++ + V EQL+ +D ED LI+
Sbjct: 717 KSGNDDQARSALLEAKKIDHECAWVYYLNGLSLLQQGKEVEGYEQLDVAHYLDPEDPLIS 776
Query: 295 PGFIDIQINGGWGVDFSR 348
+ GG+G SR
Sbjct: 777 TALAKCLLQGGYGPMHSR 794
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 658 APELPGCFEAIKDLTNLGIKVALGHSIASLAEGE 759
AP+ PG FE+I +T+ L IA+ AEG+
Sbjct: 135 APQKPGYFESISQITS---SPRLNTLIANTAEGQ 165
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 707 RFVRSLIASKQPGSSGASVIITTLSKEPYTSLIVSIPL 594
+FV+ + +K+ A ++TTLS P TS + S L
Sbjct: 472 KFVQKVTITKEGKKRVAPQLLTTLSATPSTSRLASTQL 509
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 70 VCLIFLIRRSQLYLFKMKSKSGLTRFHNCYILRDRKI 180
+C I ++ K+ SK LTR H Y L D K+
Sbjct: 242 ICKILENSVKDKFIEKLVSKEELTRVHAFYSLNDLKL 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,500
Number of Sequences: 5004
Number of extensions: 66420
Number of successful extensions: 203
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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