Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_I22
(817 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC018734-1|AAH18734.1| 439|Homo sapiens amidohydrolase domain c... 248 2e-65
AF132948-1|AAD27723.1| 404|Homo sapiens CGI-14 protein protein. 199 8e-51
AB209351-1|BAD92588.1| 192|Homo sapiens CGI-14 protein variant ... 41 0.005
BC000059-1|AAH00059.2| 771|Homo sapiens CELSR1 protein protein. 31 6.6
AL031597-2|CAI23555.1| 3014|Homo sapiens cadherin, EGF LAG seven... 31 6.6
AL031588-3|CAI19319.1| 3014|Homo sapiens cadherin, EGF LAG seven... 31 6.6
AL021392-2|CAI20967.1| 3014|Homo sapiens cadherin, EGF LAG seven... 31 6.6
AF231024-1|AAF61930.1| 3014|Homo sapiens protocadherin Flamingo ... 31 6.6
>BC018734-1|AAH18734.1| 439|Homo sapiens amidohydrolase domain
containing 2 protein.
Length = 439
Score = 248 bits (606), Expect = 2e-65
Identities = 117/226 (51%), Positives = 161/226 (71%), Gaps = 1/226 (0%)
Frame = +1
Query: 142 RFHNCYILRDRKIIKEDLWIRDGKIENPERVFYVEQLEADITVDCEDLLIAPGFIDIQIN 321
+F NC ILR K+++EDLW+R G+I +PE++F+ E+ AD DC ++APGFID+QIN
Sbjct: 14 QFTNCRILRGGKLLREDLWVRGGRILDPEKLFFEERRVADERRDCGGRILAPGFIDVQIN 73
Query: 322 GGWGVDFSRDSDNIEEGVAKVAKNLLAHGVTAFCPTMITSDQEIYRQILPRIKKTQGNKN 501
GG+GVDFS+ ++++ GVA VA+ +L+HGVT+FCPT++TS E+Y +++P+I G +
Sbjct: 74 GGFGVDFSQATEDVGSGVALVARRILSHGVTSFCPTLVTSPPEVYHKVVPQIPVKSGGPH 133
Query: 502 GATVLGVHLEGPFISPTKKGAHVESYIKN-PHRGIDTIREVYGSLDNVVIITLAPELPGC 678
GA VLG+HLEGPFIS K+GAH E+++++ + YG LDNV I+TLAPEL
Sbjct: 134 GAGVLGLHLEGPFISREKRGAHPEAHLRSFEADAFQDLLATYGPLDNVRIVTLAPELGRS 193
Query: 679 FEAIKDLTNLGIKVALGHSIASLAEGEKAVECGANLITHLFNAXLP 816
E I+ LT GI V+LGHS+A L E AV GA ITHLFNA LP
Sbjct: 194 HEVIRALTARGICVSLGHSVADLRAAEDAVWSGATFITHLFNAMLP 239
>AF132948-1|AAD27723.1| 404|Homo sapiens CGI-14 protein protein.
Length = 404
Score = 199 bits (486), Expect = 8e-51
Identities = 104/226 (46%), Positives = 147/226 (65%), Gaps = 1/226 (0%)
Frame = +1
Query: 142 RFHNCYILRDRKIIKEDLWIRDGKIENPERVFYVEQLEADITVDCEDLLIAPGFIDIQIN 321
+F NC ILR K+++EDLW+R G+I +PE++F+ E+ AD DC ++APGFID+QIN
Sbjct: 13 QFTNCRILRGGKLLREDLWVRGGRILDPEKLFFEERRVADERRDCGGRILAPGFIDVQIN 72
Query: 322 GGWGVDFSRDSDNIEEGVAKVAKNLLAHGVTAFCPTMITSDQEIYRQILPRIKKTQGNKN 501
GG+GVDFS+ ++++ GVA VA+ +L+HG P + +Y +++P+I G +
Sbjct: 73 GGFGVDFSQATEDVGSGVALVAREILSHGSPPSAPPW-SLPTGVYHKVVPQIPVKSGGPH 131
Query: 502 GATVLGVHLEGPFISPTKKGAHVESYIKN-PHRGIDTIREVYGSLDNVVIITLAPELPGC 678
G VLG+HLEGPFIS K+G H E+++++ + YG LDNV I+TLAPEL G
Sbjct: 132 GQGVLGLHLEGPFISREKRGTHPEAHLRSFEADAFQDLLATYGPLDNVRIVTLAPEL-GV 190
Query: 679 FEAIKDLTNLGIKVALGHSIASLAEGEKAVECGANLITHLFNAXLP 816
++ LT I V+LGHS+A L E AV G ITHLFNA LP
Sbjct: 191 ARVLRALT-AWICVSLGHSVADLRAAEDAVWSG-TFITHLFNAMLP 234
>AB209351-1|BAD92588.1| 192|Homo sapiens CGI-14 protein variant
protein.
Length = 192
Score = 41.1 bits (92), Expect = 0.005
Identities = 19/30 (63%), Positives = 20/30 (66%)
Frame = +1
Query: 727 GHSIASLAEGEKAVECGANLITHLFNAXLP 816
GHS+A L E AV GA ITHLFNA LP
Sbjct: 24 GHSVADLRAAEDAVWSGATFITHLFNAMLP 53
>BC000059-1|AAH00059.2| 771|Homo sapiens CELSR1 protein protein.
Length = 771
Score = 30.7 bits (66), Expect = 6.6
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Frame = +1
Query: 334 VDFSRDSDNIE--EGVAKVAKNLLAHGVTAFCPTMIT--SDQEIYRQILPRIKKTQGNKN 501
+ SRD DN E + +V+ + H VTAFC +T +D + I R++ K
Sbjct: 534 LQLSRDLDNNRPLEALMEVSVSDGIHSVTAFCTLRVTIITDDMLTNSITVRLENMSQEKF 593
Query: 502 GATVLGVHLEG--PFISPTKKGAHV 570
+ +L + +EG +S TK V
Sbjct: 594 LSPLLALFVEGVAAVLSTTKDDVFV 618
>AL031597-2|CAI23555.1| 3014|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 1 (flamingo homolog, Drosophila) protein.
Length = 3014
Score = 30.7 bits (66), Expect = 6.6
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Frame = +1
Query: 334 VDFSRDSDNIE--EGVAKVAKNLLAHGVTAFCPTMIT--SDQEIYRQILPRIKKTQGNKN 501
+ SRD DN E + +V+ + H VTAFC +T +D + I R++ K
Sbjct: 1160 LQLSRDLDNNRPLEALMEVSVSDGIHSVTAFCTLRVTIITDDMLTNSITVRLENMSQEKF 1219
Query: 502 GATVLGVHLEG--PFISPTKKGAHV 570
+ +L + +EG +S TK V
Sbjct: 1220 LSPLLALFVEGVAAVLSTTKDDVFV 1244
>AL031588-3|CAI19319.1| 3014|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 1 (flamingo homolog, Drosophila) protein.
Length = 3014
Score = 30.7 bits (66), Expect = 6.6
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Frame = +1
Query: 334 VDFSRDSDNIE--EGVAKVAKNLLAHGVTAFCPTMIT--SDQEIYRQILPRIKKTQGNKN 501
+ SRD DN E + +V+ + H VTAFC +T +D + I R++ K
Sbjct: 1160 LQLSRDLDNNRPLEALMEVSVSDGIHSVTAFCTLRVTIITDDMLTNSITVRLENMSQEKF 1219
Query: 502 GATVLGVHLEG--PFISPTKKGAHV 570
+ +L + +EG +S TK V
Sbjct: 1220 LSPLLALFVEGVAAVLSTTKDDVFV 1244
>AL021392-2|CAI20967.1| 3014|Homo sapiens cadherin, EGF LAG seven-pass
G-type receptor 1 (flamingo homolog, Drosophila) protein.
Length = 3014
Score = 30.7 bits (66), Expect = 6.6
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Frame = +1
Query: 334 VDFSRDSDNIE--EGVAKVAKNLLAHGVTAFCPTMIT--SDQEIYRQILPRIKKTQGNKN 501
+ SRD DN E + +V+ + H VTAFC +T +D + I R++ K
Sbjct: 1160 LQLSRDLDNNRPLEALMEVSVSDGIHSVTAFCTLRVTIITDDMLTNSITVRLENMSQEKF 1219
Query: 502 GATVLGVHLEG--PFISPTKKGAHV 570
+ +L + +EG +S TK V
Sbjct: 1220 LSPLLALFVEGVAAVLSTTKDDVFV 1244
>AF231024-1|AAF61930.1| 3014|Homo sapiens protocadherin Flamingo 2
protein.
Length = 3014
Score = 30.7 bits (66), Expect = 6.6
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Frame = +1
Query: 334 VDFSRDSDNIE--EGVAKVAKNLLAHGVTAFCPTMIT--SDQEIYRQILPRIKKTQGNKN 501
+ SRD DN E + +V+ + H VTAFC +T +D + I R++ K
Sbjct: 1160 LQLSRDLDNNRPLEALMEVSVSDGIHSVTAFCTLRVTIITDDMLTNSITVRLENMSQEKF 1219
Query: 502 GATVLGVHLEG--PFISPTKKGAHV 570
+ +L + +EG +S TK V
Sbjct: 1220 LSPLLALFVEGVAAVLSTTKDDVFV 1244
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,964,153
Number of Sequences: 237096
Number of extensions: 2216425
Number of successful extensions: 4369
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4365
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10147868276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -