Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I21
         (461 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3DPJ7 Cluster: Putative uncharacterized protein; n=1; ...    34   1.7  
UniRef50_Q25815 Cluster: Rps5 protein; n=1; Plasmodium falciparu...    33   2.3  
UniRef50_Q4Y0D5 Cluster: Putative uncharacterized protein; n=1; ...    32   7.0  
UniRef50_Q1FLC9 Cluster: Putative uncharacterized protein; n=1; ...    31   9.2  
UniRef50_Q22PC7 Cluster: Hypothetical repeat containing protein;...    31   9.2  
UniRef50_A3LT76 Cluster: Phosphatidylinositol kinase; n=1; Pichi...    31   9.2  

>UniRef50_A3DPJ7 Cluster: Putative uncharacterized protein; n=1;
           Staphylothermus marinus F1|Rep: Putative uncharacterized
           protein - Staphylothermus marinus (strain ATCC 43588 /
           DSM 3639 / F1)
          Length = 450

 Score = 33.9 bits (74), Expect = 1.7
 Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
 Frame = +2

Query: 68  TRAQTKEMTLYKISL-CLFLNSYI--KIFVILLFFIDTLYLDKVKLNIY 205
           T   T  +T   IS+  LF NSYI  K+FVIL+FFI  LY+ K  L +Y
Sbjct: 137 TNVTTVTITNVLISIYLLFNNSYIAFKLFVILIFFI--LYISKAILLLY 183


>UniRef50_Q25815 Cluster: Rps5 protein; n=1; Plasmodium
           falciparum|Rep: Rps5 protein - Plasmodium falciparum
          Length = 239

 Score = 33.5 bits (73), Expect = 2.3
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = -3

Query: 345 NIYFYSLYTIPFSYAHLIYCILH*TVQSIITENKYIDFYYATFEGILYILSFTLSRYNVS 166
           N Y Y +Y I   Y  L Y I +   +  I  NK ++F Y  F    Y  +  L+   + 
Sbjct: 36  NNYLYKIYNILIIYLKLYYIINNKRDKKYIFNNKNVNFIY--FYIYKYNNNIKLNNSIIK 93

Query: 165 IKNNNITKIL 136
           + NN I KI+
Sbjct: 94  LNNNIIEKII 103


>UniRef50_Q4Y0D5 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 127

 Score = 31.9 bits (69), Expect = 7.0
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 98  YKISLCLFLNSYIKIFVILLFFIDTLYLDKV 190
           Y   + L+LN+YIKI+ +L++ I   YL+ +
Sbjct: 24  YNFFIKLYLNNYIKIYKLLIYIIKYYYLNSI 54


>UniRef50_Q1FLC9 Cluster: Putative uncharacterized protein; n=1;
           Clostridium phytofermentans ISDg|Rep: Putative
           uncharacterized protein - Clostridium phytofermentans
           ISDg
          Length = 854

 Score = 31.5 bits (68), Expect = 9.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 258 ITENKYIDFYYATFEGILYILSFTLSRYNVSIKNNNITK 142
           IT  +Y DFY+   E  +Y++  ++SRY++  K   + K
Sbjct: 699 ITYYEYSDFYFDDSEEYIYLVGNSISRYDLKSKKLEVVK 737


>UniRef50_Q22PC7 Cluster: Hypothetical repeat containing protein; n=3;
            Tetrahymena thermophila SB210|Rep: Hypothetical repeat
            containing protein - Tetrahymena thermophila SB210
          Length = 2627

 Score = 31.5 bits (68), Expect = 9.2
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -3

Query: 345  NIYFYSL-YTIPFSYAHLIYCILH*TVQSIITENKYIDFYYATFEGILYILSFTLSRYNV 169
            NI+  S+ YT+ FS   L   IL+      I  +++ + Y  +  G  YI ++TL+  NV
Sbjct: 1211 NIFLKSIQYTLTFSSTALY--ILNYVGSITIKNSQFQNSYSNSLYGFAYIQTYTLTIDNV 1268

Query: 168  SIKNNNIT 145
            S  N+  T
Sbjct: 1269 SFNNSTFT 1276


>UniRef50_A3LT76 Cluster: Phosphatidylinositol kinase; n=1; Pichia
            stipitis|Rep: Phosphatidylinositol kinase - Pichia
            stipitis (Yeast)
          Length = 2904

 Score = 31.5 bits (68), Expect = 9.2
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = -3

Query: 273  TVQSIITENKYIDFYY-ATFEGILYILSFT---LSRYNVSIKNNNITKILM 133
            TV++ + + K +  +  ATF+ IL ++S T   +  YN S K  N+ KILM
Sbjct: 1551 TVETYLNDTKEMSIFTDATFKYILILISLTFETIDEYNDSGKLQNVAKILM 1601


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 312,953,272
Number of Sequences: 1657284
Number of extensions: 5585312
Number of successful extensions: 12898
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12892
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24771286585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)