Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I21
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   4.3  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   5.6  
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    25   7.4  

>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 6/24 (25%), Positives = 18/24 (75%)
 Frame = +2

Query: 113 CLFLNSYIKIFVILLFFIDTLYLD 184
           C F++S++K+ ++++FF   + ++
Sbjct: 208 CEFVSSFLKVVIVIIFFFVAIIIN 231


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 243  YIDFYYATFEGILYILSFTLSRYNVSIKNNNITKIL 136
            Y+D     F+    +  FTL + +V++K  N T +L
Sbjct: 1697 YLDLLEGNFDANQELKLFTLRKISVALKELNATNLL 1732


>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 333 YSLYTIPFSYAHLIYCI 283
           YS YTIP  Y  L YC+
Sbjct: 59  YSEYTIPKLYIKLQYCV 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,391,396
Number of Sequences: 5004
Number of extensions: 26414
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)