Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I21
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0934 - 7212408-7212794,7212887-7213416,7214192-7214302,721...    27   5.6  
03_06_0323 + 33121062-33121653,33121748-33121839,33122482-331225...    27   7.3  
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    27   9.7  

>06_01_0934 -
           7212408-7212794,7212887-7213416,7214192-7214302,
           7214322-7214811
          Length = 505

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 34  CRLIHDSLTKRHTRTNKR 87
           C L+HDSLT R  R ++R
Sbjct: 481 CLLVHDSLTNRRVRNSQR 498


>03_06_0323 +
           33121062-33121653,33121748-33121839,33122482-33122565,
           33123126-33123203,33123500-33123700,33123821-33123928,
           33124145-33124219,33124338-33124537,33124654-33124722,
           33125159-33125279,33126840-33127120,33127522-33127594
          Length = 657

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +1

Query: 1   RPADIVVERHLCRLIHDSLTKRHTRTNKRDDALQNQPLSLSK*LH*NFRNIVIFYR 168
           RPA  + E H  R   +++  R TR  +     QN   +LSK  H  F + V+  R
Sbjct: 29  RPALRLPELHATRRRRNNVACRATRAREAPPQQQNTAAALSKEAHKYFDHAVVTVR 84


>08_02_1426 + 27009720-27010787,27011846-27012517,27012999-27013793,
            27014914-27014943,27018095-27019987
          Length = 1485

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +2

Query: 134  IKIFVILLFFIDTLYLDKVKLNIYKIPSKVA**KSMYLFSVI 259
            IK+FV +L F+ + +L  + L   K+P ++   +S++  SV+
Sbjct: 1219 IKLFVSVLMFLISGWLRNMDLFGVKVPRRIGRLRSIHTLSVV 1260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,500,826
Number of Sequences: 37544
Number of extensions: 119844
Number of successful extensions: 188
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)