Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I21
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087081-16|AAG37970.1|  252|Caenorhabditis elegans Hypothetical...    29   1.2  
AF039715-3|AAB96732.2|  171|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF025463-3|AAB71009.2|  403|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AC087081-16|AAG37970.1|  252|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.3 protein.
          Length = 252

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 89  MTLYKISLCLFLNSYIKIFVILLFFIDTLYLDKVKLNIYKIPSKV 223
           M +Y I LC + NS    + I+ F   T+YL  + +NI  IP+ V
Sbjct: 158 MEVYYIYLCTWTNSSSNNYNIIHFLPGTIYLCPI-INIMSIPAVV 201


>AF039715-3|AAB96732.2|  171|Caenorhabditis elegans Hypothetical
           protein R06A10.1 protein.
          Length = 171

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 59  QNVTRAQTKEMTLYKISLCLFLNSYIKIFVILLFFIDTLY 178
           +NVT    + ++  K  L  F   YIKIF+  LF ++  Y
Sbjct: 113 ENVTEDPYEWISHRKAILIAFAGIYIKIFISQLFILNRYY 152


>AF025463-3|AAB71009.2|  403|Caenorhabditis elegans Hypothetical
           protein K10B4.4 protein.
          Length = 403

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -3

Query: 228 YATFEGILYILSFTLSRYNVSIKNNNITKILM*LFRKRQRLIL*SVISFVCA 73
           + ++  I+ I  F+  R+ ++I +   +KI   L+R    +IL   ISFVCA
Sbjct: 115 FTSYASIMIICCFSFERW-LAICHPLRSKIFSTLWRANVLIILAWTISFVCA 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,441,668
Number of Sequences: 27780
Number of extensions: 138307
Number of successful extensions: 328
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)