Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I20
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    28   1.5  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    27   3.4  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    27   4.4  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    27   4.4  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   7.8  

>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 215 WYIRYLLATELYMVETWERIVIHIVFGILFGLFWFFNYY--ITIS 343
           W I+  L  E +      R    I F  LF LFWF+ ++  +TIS
Sbjct: 268 WDIKTGLTVERFFQHFLARFFCLIFFPFLFFLFWFYMHFNILTIS 312


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 191 KVKKFISYWYIRYLLATELYMVETWERIVIHIVFGILFGLFWFFNYYITISAI 349
           +VK F+S W     +    +  E W  I I+I   IL  L   +   I + AI
Sbjct: 97  EVKDFLSIWINESFINENRFYSEIWGPIAIYICLFILLLLGLIYCSKIVVKAI 149


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 191 KVKKFISYWYIRYLLATELYMVETWERIVIHIVFGILFGLFWFFNYYITISAI 349
           +VK F+S W     +    +  E W  I I+I   +L  L   +   I + AI
Sbjct: 97  EVKDFLSIWINESFINENRFYSEIWGPIAIYICLFVLLLLGLIYCSKIVVKAI 149


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 191 KVKKFISYWYIRYLLATELYMVETWERIVIHIVFGILFGLFWFFNYYITISAI 349
           +VK F+S W     +    +  E W  I I+I   +L  L   +   I + AI
Sbjct: 97  EVKDFLSIWINESFINENRFYSEIWGPIAIYICLFVLLLLGLIYCSKIVVKAI 149


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 170 EKMDLIEKVKKFISYWY--IRYLLATELYMVETWERIV 277
           E++D+IE++   +  WY  I +LL T    +ET  +++
Sbjct: 38  EELDIIEELDDPVDVWYRCIEWLLETRFLGMETVNKML 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,453,282
Number of Sequences: 5004
Number of extensions: 71345
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)