Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I20
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0246 - 14207899-14208052,14208132-14208206,14208682-142088...    32   0.50 
09_06_0312 + 22235287-22235334,22235418-22235535,22235628-222356...    31   0.88 
02_01_0429 - 3132848-3135043                                           30   2.0  
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476     29   6.2  
02_04_0150 - 20215070-20217577                                         28   8.2  

>01_03_0246 -
           14207899-14208052,14208132-14208206,14208682-14208801,
           14208905-14208981,14209204-14209285,14209439-14209485,
           14209561-14209681,14210188-14210235,14210478-14210569,
           14211001-14211057,14211203-14211273,14211376-14211493,
           14211574-14211621
          Length = 369

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +2

Query: 200 KFISYWYIRYLLATELYMVETWERIVIHIVFGILFGLFWFFNYYITISAISRLRGN 367
           +F   WYI      E  M  TW+ I   + F ++FG   F  +  TI     LR N
Sbjct: 181 QFFCAWYIVDYFVHEELMTSTWDIIAERLGFMLVFGDLVFIPFTFTIQGWWLLRNN 236


>09_06_0312 +
           22235287-22235334,22235418-22235535,22235628-22235698,
           22235799-22235855,22236271-22236362,22236604-22236651,
           22237397-22237517,22237596-22237642,22237796-22237877,
           22238526-22238611,22238864-22238938,22239018-22239171
          Length = 332

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 200 KFISYWYIRYLLATELYMVETWERIVIHIVFGILFGLFWFFNYYITISA 346
           +F   WYI      E +M  TW+ I   + F ++FG   F  +  TI +
Sbjct: 181 QFFCAWYIVDYFVHEEFMTSTWDIIAERLGFMLVFGDLVFIPFTFTIQS 229


>02_01_0429 - 3132848-3135043
          Length = 731

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 284 IVFGILFGLFWFFNYYITISAISRLRGNHGII 379
           ++FGI FGLF+ +   +    + RLR   GI+
Sbjct: 692 VIFGITFGLFFAYGVLLDQMVLKRLRSLQGIL 723


>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
          Length = 676

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 779 TCPPEPLSVLSGTTSTGRLPR 841
           +CPPEP S  SG+TS+   PR
Sbjct: 461 SCPPEPTSSTSGSTSSWVPPR 481


>02_04_0150 - 20215070-20217577
          Length = 835

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 836 GGGQCXWYLKAPIMVREDTSCVVPKML*LTLFGFSP 729
           GGG+  W +   I++   T C  P  + +  F  SP
Sbjct: 9   GGGEGRWVVMRDIVINNKTVCTTPGPMLVATFAVSP 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,510,537
Number of Sequences: 37544
Number of extensions: 382976
Number of successful extensions: 718
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)