Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I19
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    25   5.3  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   5.3  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    24   9.3  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    24   9.3  

>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 136 FHGFPSYHRSDNCSENTFRCYKATEINN 219
           ++  PSY   +N  +N  RCY+  ++ +
Sbjct: 19  WNDLPSYGEDENVPQNIRRCYQLLDMTS 46


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 76  CSMNGCHSTSEKHKKDSNITFHGFPSYHRSDNCSENT 186
           C ++  HS    H   S+    G   Y+ + NC+ N+
Sbjct: 567 CGLDSIHSVRFFHAIQSHFHLEGPIRYNMNSNCTPNS 603


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 130 CYYLSCVFPMYYDIRSLNKPS 68
           C YLS   P +  + SLN P+
Sbjct: 249 CIYLSMPIPKFCTVESLNVPN 269


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 58  LLKMTVCSMNGCHSTSEKHKKDSNITFHGFP 150
           LLK    SM G  S  +K K++ NIT  G P
Sbjct: 293 LLKQRQSSMGGKVSAKKKQKQNLNIT-KGLP 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 959,866
Number of Sequences: 5004
Number of extensions: 17098
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)