Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_I19
         (381 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0505 + 17897038-17898870,17899049-17899108,17900034-179001...    31   0.23 
04_04_0723 - 27572697-27572793,27572842-27572903,27573229-27573414     27   6.6  

>08_02_0505 +
           17897038-17898870,17899049-17899108,17900034-17900150,
           17900352-17900389,17900446-17900641
          Length = 747

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 85  NGCHSTSEKHKKDSNITFHGFPSYHRSDNCSENTFRCY 198
           NG   T   +  DSN+   GF +Y  S N + +TF  Y
Sbjct: 240 NGLRETFTTYGNDSNVIASGFTNYGESGNGATDTFTAY 277



 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 79  SMNGCHSTSEKHKKDSNITFHGFPSYHRSDNCSENTFRCYKA 204
           S NG   T   + K+ N+  + F SY    N   +TF+ Y++
Sbjct: 266 SGNGATDTFTAYGKEGNVPDNTFRSYGAGGNAGVDTFKGYRS 307


>04_04_0723 - 27572697-27572793,27572842-27572903,27573229-27573414
          Length = 114

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 91  CHSTSEKHKKDSNITFHGFPSYHRSDNCSEN 183
           C +T   HKK ++   H   + HR+DN ++N
Sbjct: 60  CQNTMPIHKKFTDNNIHIHRAAHRTDNNTDN 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,569,962
Number of Sequences: 37544
Number of extensions: 91602
Number of successful extensions: 174
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)